ENSXMAG00000018559 (Xiphophorus maculatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ENSXMAG00000018559 T253876_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.880 0.880
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.880 0.880
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.880 0.880
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.880 0.880
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.880 0.880
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.880 0.880
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.880 0.880
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.880 0.880
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.880 0.880
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.880 0.880
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.880 0.880
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.880 0.880
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.880 0.880
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.880 0.880
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.880 0.880
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.880 0.880
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.880 0.880
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.880 0.880
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.880 0.880
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.880 0.880
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.880 0.880
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.880 0.880
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.840 0.840
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.840 0.840
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000018599 MADS box 116 140

Links

Other MADS box family TFs
Other Xiphophorus maculatus TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00801 Capronia coronata A1O1_00801 I 0.000
G647_04666 Cladophialophora carrionii G647_04666 I 0.000
PV10_00514 Exophiala mesophila PV10_00514 I 0.000
PV04_05279 Capronia semiimmersa PV04_05279 I 0.000
A1O7_04026 Cladophialophora yegresii A1O7_04026 I 0.000
Z518_10184 Rhinocladiella mackenziei Z518_10184 I 0.000
Z517_11712 Fonsecaea pedrosoi Z517_11712 I 0.000
PV10_04925 Exophiala mesophila PV10_04925 N 0.000
TEQG_07260 Trichophyton equinum TEQG_07260 N 0.000
PV08_08880 Exophiala spinifera PV08_08880 N 0.000
PV07_00882 Cladophialophora immunda PV07_00882 N 0.000
PV06_09822 Exophiala oligosperma PV06_09822 N 0.000
PV05_00997 Exophiala xenobiotica PV05_00997 N 0.000
PV04_08823 Capronia semiimmersa PV04_08823 N 0.000
PMAA_049200 Talaromyces marneffei PMAA_049200 N 0.000
PDE_02184 Penicillium oxalicum PDE_02184 N 0.000
PABG_00768 Paracoccidioides brasiliensis PABG_00768 N 0.000
PV11_02484 Exophiala sideris PV11_02484 N 0.000
PVAR5_4548 Byssochlamys spectabilis PVAR5_4548 N 0.000
MCYG_02260 Arthroderma otae MCYG_02260 N 0.000
TESG_03991 Trichophyton tonsurans TESG_03991 N 0.000
TRV_02239 Trichophyton verrucosum TRV_02239 N 0.000
TSTA_039140 Talaromyces stipitatus TSTA_039140 N 0.000
UREG_02425 Uncinocarpus reesii UREG_02425 N 0.000
Z517_05164 Fonsecaea pedrosoi Z517_05164 N 0.000
Z518_10852 Rhinocladiella mackenziei Z518_10852 N 0.000
Z519_01916 Cladophialophora bantiana Z519_01916 N 0.000
Z519_12024 Cladophialophora bantiana Z519_12024 N 0.000
fgenesh1_pm.00771_#_78 Aspergillus carbonarius fgenesh1_pm.00771_#_78 N 0.000
PMAA_049200 Penicillium marneffei PMAA_049200 N 0.000
CADAORAG00002457 Aspergillus oryzae CADAORAG00002457 N 0.000
MCYG_02260 Microsporum canis MCYG_02260 N 0.000
A1O1_02509 Capronia coronata A1O1_02509 N 0.000
A1O3_00914 Capronia epimyces A1O3_00914 N 0.000
A1O5_01498 Cladophialophora psammophila A1O5_01498 N 0.000
A1O5_03005 Cladophialophora psammophila A1O5_03005 N 0.000
A1O7_08287 Cladophialophora yegresii A1O7_08287 N 0.000
ARB_01120 Arthroderma benhamiae ARB_01120 N 0.000
BDDG_08162 Blastomyces dermatitidis BDDG_08162 N 0.000
ACLA_007650 Aspergillus clavatus CADACLAG00000450 N 0.000
CADAFLAG00000474 Aspergillus flavus CADAFLAG00000474 N 0.000
AFUA_7G05960 Aspergillus fumigatus CADAFUAG00009660 N 0.000
CADANGAG00005435 Aspergillus niger CADANGAG00005435 N 0.000
ANIA_06733 Aspergillus nidulans CADANIAG00007526 N 0.000
PAAG_03715 Paracoccidioides sp lutzii PAAG_03715 N 0.000
NFIA_027200 Neosartorya fischeri CADNFIAG00002534 N 0.000
CPC735_021860 Coccidioides posadasii CPC735_021860 N 0.000
G647_07244 Cladophialophora carrionii G647_07244 N 0.000
H101_04104 Trichophyton interdigitale H101_04104 N 0.000
H102_03320 Trichophyton rubrum H102_03320 N 0.000
H105_03339 Trichophyton soudanense H105_03339 N 0.000
HCBG_04319 Histoplasma capsulatum HCBG_04319 N 0.000
HMPREF1120_02238 Exophiala dermatitidis HMPREF1120_02238 N 0.000
HMPREF1541_03654 Cyphellophora europaea HMPREF1541_03654 N 0.000
HMPREF1541_09227 Cyphellophora europaea HMPREF1541_09227 N 0.000
CIMG_08163 Coccidioides immitis CIMG_08163 N 0.000
MGYG_07575 Microsporum gypseum MGYG_07575 N 0.000