Kpol_1048p48 (Vanderwaltozyma polyspora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Kpol_1048p48 T254498_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.812 0.812
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.812 0.812
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.812 0.812
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO18617 MADS box 10 57

Links

Other MADS box family TFs
Other Vanderwaltozyma polyspora TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0006s07420 Populus trichocarpa POPTR_0006s07420 I
PDK_20s1347451g001 Phoenix dactylifera PDK_20s1347451g001 I
evm.TU.supercontig_1024.1 Carica papaya evm.TU.supercontig_1024.1 I
Aquca_072_00056 Aquilegia coerulea Aquca_072_00056 I
Aquca_019_00147 Aquilegia coerulea Aquca_019_00147 I
gw1.90.96.1 Physcomitrella patens gw1.90.96.1 I
estExt_fgenesh1_pg.C_1240017 Physcomitrella patens estExt_fgenesh1_pg.C_1240017 I
cassava7475.valid.m1 Manihot esculenta cassava7475.valid.m1 I
30131.m006993 Ricinus communis 30131.m006993 I
Solyc05g014590.2 Solanum lycopersicum Solyc05g014590.2 I
PGSC0003DMG400017440 Solanum tuberosum PGSC0003DMG400017440 I
PGSC0003DMG400014246 Solanum tuberosum PGSC0003DMG400014246 I
GSMUA_Achr1G07450_001 Musa acuminata GSMUA_Achr1G07450_001 I
GSMUA_Achr1G07330_001 Musa acuminata GSMUA_Achr1G07330_001 I
OS04G0300600 Oryza sativa OS04G0300600 N
ORUFI04G07840 Oryza rufipogon ORUFI04G07840 N
BGIOSGA015389 Oryza indica BGIOSGA015389 N
ORGLA04G0051300 Oryza glaberrima ORGLA04G0051300 N
OPUNC04G05620 Oryza punctata OPUNC04G05620 N
cassava27372.m1 Manihot esculenta cassava27372.m1 N
ONIVA01G07150 Oryza nivara ONIVA01G07150 N
OMERI03G04040 Oryza meridionalis OMERI03G04040 N
OGLUM04G06590 Oryza glumaepatula OGLUM04G06590 N
OBART04G06800 Oryza barthii OBART04G06800 N
GSMUA_Achr3G00640_001 Musa acuminata GSMUA_Achr3G00640_001 N
evm.TU.supercontig_69.52 Carica papaya evm.TU.supercontig_69.52 N
gene00631-v1.0-hybrid Fragaria vesca gene00631-v1.0-hybrid N
Lus10030609.g Linum usitatissimum Lus10030609.g N