OBART05G06590 (Oryza barthii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OBART05G06590 T254981_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.854 0.854
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.854 0.854
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.854 0.854
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.854 0.854
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.854 0.854
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.854 0.854
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.854 0.854
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.854 0.854
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.854 0.854
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.833 0.833
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.833 0.833
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.833 0.833
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.792 0.792
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.792 0.792
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.792 0.792
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.792 0.792
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.771 0.771
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.750 0.750
Q9LEH9_HORVU
M10983_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM9_01 		0.750 0.750
Q43616_PETHY
M11004_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP7_01 		0.750 0.750
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.750 0.750
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.750 0.750
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.750 0.750
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.750 0.750
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.750 0.750
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.729 0.729
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.729 0.729
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.729 0.729
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.729 0.729
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.729 0.729
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.729 0.729
Q9LEI1_HORVU
M10984_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM7_01 		0.729 0.729
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.729 0.729
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.729 0.729
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.729 0.729
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.729 0.729
MADS1
M10969_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_02 		0.729 0.729
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.729 0.729
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.729 0.729
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.729 0.729
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
MADS5
M10970_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_02 		0.729 0.729
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.729 0.729
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.729 0.729
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.729 0.729
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.729 0.729
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.729 0.729
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.729 0.729
Q9ATF2_PETHY
M11014_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP5_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART05G06590.1 MADS box 35 82

Links

Other MADS box family TFs
Other Oryza barthii TFs

777 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AFAF007403 Anopheles farauti AFAF007403 I 0.000
Cflo_06253--XP_001122398.1_APIME Camponotus floridanus Cflo_06253--XP_001122398.1_APIME I 0.000
fgenesh2_pg.scaffold_10000067 Branchiostoma floridae fgenesh2_pg.scaffold_10000067 I 0.000
fgenesh2_pg.scaffold_63000032 Branchiostoma floridae fgenesh2_pg.scaffold_63000032 I 0.000
Sakowv30044194m.g Saccoglossus kowalevskii Sakowv30044194m.g I 0.000
AALB003384 Anopheles albimanus AALB003384 I 0.000
AARA001486 Anopheles arabiensis AARA001486 I 0.000
AATE008808 Anopheles atroparvus AATE008808 I 0.000
ACOM028352 Anopheles coluzzii ACOM028352 I 0.000
ACUA003130 Anopheles culicifacies ACUA003130 I 0.000
ADIR008273 Anopheles dirus ADIR008273 I 0.000
AEPI009779 Anopheles epiroticus AEPI009779 I 0.000
AAEL003158 Aedes aegypti AAEL003158 I 0.000
AFUN002303 Anopheles funestus AFUN002303 I 0.000
AMEC009026 Anopheles melas AMEC009026 I 0.000
AMEM013111 Anopheles merus AMEM013111 I 0.000
AMIN003870 Anopheles minimus AMIN003870 I 0.000
AQUA010265 Anopheles quadriannulatus AQUA010265 I 0.000
ASIS007877 Anopheles sinensis ASIS007877 I 0.000
ASTEI03376 Anopheles stephensi ASTEI03376 I 0.000
LLOJ009601 Lutzomyia longipalpis LLOJ009601 I 0.000
A_06265 Schistosoma haematobium A_06265 I 0.000
D915_03631 Fasciola hepatica D915_03631 I 0.000
SPU_020565 Strongylocentrotus purpuratus SPU_020565 I 0.000
CpipJ_CPIJ003723 Culex pipiens CpipJ_CPIJ003723 I 0.000
ACYPI28321 Acyrthosiphon pisum ACYPI28321 I 0.000
ADAC003085 Anopheles darlingi ADAC003085 I 0.000
AGAP003406 Anopheles gambiae AGAP003406 I 0.000
CapteG70959 Capitella teleta CapteG70959 I 0.000
CPIJ003723 Culex quinquefasciatus CPIJ003723 I 0.000
NKX2-3 Dasypus novemcinctus ENSDNOG00000040342 I 0.000
ENSDNOG00000042382 Dasypus novemcinctus ENSDNOG00000042382 I 0.000
ENSFALG00000015342 Ficedula albicollis ENSFALG00000015342 I 0.000
ENSONIG00000010351 Oreochromis niloticus ENSONIG00000010351 I 0.000
ENSTRUG00000006200 Takifugu rubripes ENSTRUG00000006200 I 0.000
tetur05g02800 Tetranychus urticae tetur05g02800 I 0.000
Smp_000075 Schistosoma mansoni Smp_000075 I 0.000
SINV16571 Solenopsis invicta SINV16571 I 0.000
NEMVEDRAFT_v1g80927 Nematostella vectensis NEMVEDRAFT_v1g80927 I 0.000
MESCA004778 Megaselia scalaris MESCA004778 I 0.000
MCINX015546 Melitaea cinxia MCINX015546 I 0.000
LotgiG80572 Lottia gigantea LotgiG80572 I 0.000
ENSPFOG00000022617 Poecilia formosa ENSPFOG00000022617 I 0.000
BGIBMGA005045 Bombyx mori BGIBMGA005045 N 0.000
KGM_09142 Danaus plexippus KGM_09142 N 0.000
HMEL009910 Heliconius melpomene HMEL009910 N 0.000
ECANG7_00675 Echinococcus canadensis ECANG7_00675 N 0.000
HDID_0000204801 Hymenolepis diminuta HDID_0000204801 N 0.000
HmN_000016500 Hymenolepis microstoma HmN_000016500 N 0.000
HNAJ_0001194801 Hymenolepis nana HNAJ_0001194801 N 0.000
SSLN_0000254701 Schistocephalus solidus SSLN_0000254701 N 0.000
TASK_0000056701 Taenia asiatica TASK_0000056701 N 0.000
TTAC_0000784501 Hydatigera taeniaeformis TTAC_0000784501 N 0.000