POPTR_0007s03290 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0007s03290 T255835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.792 0.792
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.792 0.792
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.792 0.792
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
AP1
M08144_2.00 		Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK		 ChIP-seq
Mathelier et al.(2014)
MA0940.1 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.708 0.708
AP1
M10905_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSA_Q2 		0.708 0.708
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s03290.1 MADS box 10 57

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

521 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRIVIDRAFT_36951 Trichoderma virens TRIVIDRAFT_36951 N 0.000
MYCTH_2305929 Myceliophthora thermophila MYCTH_2305929 N 0.000
NechaG60026 Fusarium solani NechaG60026 N 0.000
OCS_06782 Ophiocordyceps sinensis OCS_06782 N 0.000
PISMIDRAFT_589784 Pisolithus microcarpus PISMIDRAFT_589784 N 0.000
S40285_02142 Stachybotrys chlorohalonata S40285_02142 N 0.000
S40288_01911 Stachybotrys chartarum S40288_01911 N 0.000
SERLA73DRAFT_104923 Serpula lacrymans SERLA73DRAFT_104923 N 0.000
SMAC_08547 Sordaria macrospora SMAC_08547 N 0.000
TRIATDRAFT_161664 Trichoderma atroviride TRIATDRAFT_161664 N 0.000
TRIREDRAFT_77609 Trichoderma reesei TRIREDRAFT_77609 N 0.000
MGU_04765 Metarhizium guizhouense MGU_04765 N 0.000
UCRPA7_6046 Togninia minima UCRPA7_6046 N 0.000
UREG_07450 Uncinocarpus reesii UREG_07450 N 0.000
UV8b_5421 Ustilaginoidea virens UV8b_5421 N 0.000
VDAG_09953 Verticillium dahliae VDAG_09953 N 0.000
VDBG_03434 Verticillium alfalfae VDBG_03434 N 0.000
VHEMI07914 Torrubiella hemipterigena VHEMI07914 N 0.000
X797_001129 Metarhizium robertsii X797_001129 N 0.000
estExt_Genewise1.C_90051 Neurospora discreta estExt_Genewise1.C_90051 N 0.000
estExt_Genewise1.C_sca_3_chr4_2_00632 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_00632 N 0.000
Pavir.J12660 Panicum virgatum Pavir.J12660 N 0.000
FPSE_04226 Fusarium pseudograminearum FPSE_04226 N 0.000
BGHDH14_bgh04116 Blumeria graminis BGHDH14_bgh04116 N 0.000
CCM_00998 Cordyceps militaris CCM_00998 N 0.000
CH063_07308 Colletotrichum higginsianum CH063_07308 N 0.000
Cob_01816 Colletotrichum orbiculare Cob_01816 N 0.000
CPUR_00596 Claviceps purpurea CPUR_00596 N 0.000
CSUB01_04200 Colletotrichum sublineola CSUB01_04200 N 0.000
E5Q_06447 Mixia osmundae E5Q_06447 N 0.000
FFUJ_13265 Fusarium fujikuroi FFUJ_13265 N 0.000
FGRRES_06071 Fusarium graminearum FGRRES_06071 N 0.000
FOXG_07781 Fusarium oxysporum FOXG_07781 N 0.000
VDBG_03434 Verticillium albo atrum VDBG_03434 N 0.000
FVEG_04708 Fusarium verticillioides FVEG_04708 N 0.000
GLRG_10810 Colletotrichum graminicola GLRG_10810 N 0.000
M378DRAFT_479088 Amanita muscaria M378DRAFT_479088 N 0.000
MAC_09480 Metarhizium acridum MAC_09480 N 0.000
MAJ_05808 Metarhizium majus MAJ_05808 N 0.000
MAM_04763 Metarhizium album MAM_04763 N 0.000
MANI_012588 Metarhizium anisopliae MANI_012588 N 0.000
MBM_02991 Marssonina brunnea MBM_02991 N 0.000
MBR_03064 Metarhizium brunneum MBR_03064 N 0.000