UREG_04511 (Uncinocarpus reesii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 UREG_04511 T256734_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.868 0.868
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.816 0.816
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.816 0.816
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.816 0.816
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.816 0.816
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.816 0.816
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.816 0.816
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.737 0.737
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.737 0.737
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.737 0.737
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.737 0.737
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.737 0.737
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.737 0.737
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.737 0.737
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.737 0.737
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.737 0.737
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.737 0.737
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.737 0.737
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.737 0.737
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.737 0.737
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.737 0.737
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.737 0.737
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.737 0.737
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.737 0.737
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.737 0.737
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.737 0.737
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.737 0.737
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.737 0.737
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EEP79665 MADS box 61 98

Links

Other MADS box family TFs
Other Uncinocarpus reesii TFs

369 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_07661 Aspergillus nidulans CADANIAG00000786 D
HMPREF1541_02336 Cyphellophora europaea HMPREF1541_02336 I
MBM_07620 Marssonina brunnea MBM_07620 I
KUCA_T00002265001 Kuraishia capsulata KUCA_T00002265001 I
PGUG_02866 Candida guilliermondii PGUG_02866 I
PAS_chr3_0712 Komagataella pastoris PAS_chr3_0712 I
PDE_04633 Penicillium oxalicum PDE_04633 I
PGUG_02866 Meyerozyma guilliermondii PGUG_02866 I
PICST_72282 Scheffersomyces stipitis PICST_72282 I
PV04_01709 Capronia semiimmersa PV04_01709 I
PV07_10364 Cladophialophora immunda PV07_10364 I
PVAR5_5675 Byssochlamys spectabilis PVAR5_5675 I
Z517_08575 Fonsecaea pedrosoi Z517_08575 I
Z518_03696 Rhinocladiella mackenziei Z518_03696 I
Z519_03196 Cladophialophora bantiana Z519_03196 I
estExt_genewise1_human.C_chr_5.10129 Pichia stipitis estExt_genewise1_human.C_chr_5.10129 I
fgenesh1_pg.00152_#_174 Aspergillus carbonarius fgenesh1_pg.00152_#_174 I
XP_002492941.1 Pichia pastoris XP_002492941.1 I
CADANGAG00003527 Aspergillus niger CADANGAG00003527 I
A1O1_00042 Capronia coronata A1O1_00042 I
A1O5_03878 Cladophialophora psammophila A1O5_03878 I
A1O7_00358 Cladophialophora yegresii A1O7_00358 I
ACLA_094570 Aspergillus clavatus CADACLAG00008883 I
CADAFLAG00006470 Aspergillus flavus CADAFLAG00006470 I
CADAORAG00010733 Aspergillus oryzae CADAORAG00010733 I
CANTEDRAFT_107875 Candida tenuis CANTEDRAFT_107875 I
EURHEDRAFT_518478 Aspergillus ruber EURHEDRAFT_518478 I
G210_3997 Candida maltosa G210_3997 I
CMQ_3920 Grosmannia clavigera CMQ_3920 I
G647_00393 Cladophialophora carrionii G647_00393 I
HMPREF1120_05852 Exophiala dermatitidis HMPREF1120_05852 N
H102_08016 Trichophyton rubrum H102_08016 N
H101_06801 Trichophyton interdigitale H101_06801 N
A1O9_05772 Exophiala aquamarina A1O9_05772 N
ARB_05762 Arthroderma benhamiae ARB_05762 N
TRV_04480 Trichophyton verrucosum TRV_04480 N
TESG_02135 Trichophyton tonsurans TESG_02135 N
TEQG_02573 Trichophyton equinum TEQG_02573 N
MGYG_00747 Microsporum gypseum MGYG_00747 N
PV11_08528 Exophiala sideris PV11_08528 N
PV10_01908 Exophiala mesophila PV10_01908 N
PV08_06249 Exophiala spinifera PV08_06249 N
H105_08042 Trichophyton soudanense H105_08042 N
PV06_03988 Exophiala oligosperma PV06_03988 N
PV05_10994 Exophiala xenobiotica PV05_10994 N