Ca_21060 (Cicer arietinum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ca_21060 T256927_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.958 0.958
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.958 0.958
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.958 0.958
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.812 0.812
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.771 0.771
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.771 0.771
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.750 0.750
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.729 0.729
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.729 0.729
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.729 0.729
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.729 0.729
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.729 0.729
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.729 0.729
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.729 0.729
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.729 0.729
Q9ATE2_PETHY
M11007_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP29_01 		0.729 0.729
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.729 0.729
Q9ZRA5_MALDO
M11030_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_04 		0.729 0.729
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.708 0.708
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.708 0.708
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.708 0.708
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_21060 MADS box 10 57

Links

Other MADS box family TFs
Other Cicer arietinum TFs

972 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSTSYG00000002965 Tarsius syrichta ENSTSYG00000002965 I 0.000
ENSSARG00000001033 Sorex araneus ENSSARG00000001033 I 0.000
ASIS022478 Anopheles sinensis ASIS022478 N 0.000
DILT_0001817101 Diphyllobothrium latum DILT_0001817101 N 0.000
PPAI007566 Phlebotomus papatasi PPAI007566 N 0.000
PPAI007558 Phlebotomus papatasi PPAI007558 N 0.000
PPAI002081 Phlebotomus papatasi PPAI002081 N 0.000
BGLB006532 Biomphalaria glabrata BGLB006532 N 0.000
ASTEI08594 Anopheles stephensi ASTEI08594 N 0.000
GPUH_0000522701 Gongylonema pulchrum GPUH_0000522701 N 0.000
AQUA010448 Anopheles quadriannulatus AQUA010448 N 0.000
AQUA000258 Anopheles quadriannulatus AQUA000258 N 0.000
AMIN008750 Anopheles minimus AMIN008750 N 0.000
AMEM003406 Anopheles merus AMEM003406 N 0.000
AMEC008583 Anopheles melas AMEC008583 N 0.000
AFUN010566 Anopheles funestus AFUN010566 N 0.000
AFAF003029 Anopheles farauti AFAF003029 N 0.000
AEPI004512 Anopheles epiroticus AEPI004512 N 0.000
EEL_0000897001 Elaeophora elaphi EEL_0000897001 N 0.000
AEPI001840 Anopheles epiroticus AEPI001840 N 0.000
GPUH_0000570001 Gongylonema pulchrum GPUH_0000570001 N 0.000
nLs.2.1.2.g03987 Litomosoides sigmodontis nLs.2.1.2.g03987 N 0.000
nOo.2.0.1.g05407 Onchocerca ochengi nOo.2.0.1.g05407 N 0.000
PEQ_0000369901 Parascaris equorum PEQ_0000369901 N 0.000
PXEA_0000565701 Protopolystoma xenopodis PXEA_0000565701 N 0.000
PXEA_0001168701 Protopolystoma xenopodis PXEA_0001168701 N 0.000
PXEA_0002770801 Protopolystoma xenopodis PXEA_0002770801 N 0.000
SMRZ_0000684401 Schistosoma margrebowiei SMRZ_0000684401 N 0.000
SMTD_0001338101 Schistosoma mattheei SMTD_0001338101 N 0.000
SPER_0003400201 Spirometra erinaceieuropaei SPER_0003400201 N 0.000
SSLN_0000607001 Schistocephalus solidus SSLN_0000607001 N 0.000
TRE_0001960401 Trichobilharzia regenti TRE_0001960401 N 0.000
TsM_000048500 Taenia solium TsM_000048500 N 0.000
NEMVEDRAFT_v1g57075 Nematostella vectensis NEMVEDRAFT_v1g57075 N 0.000
ACEP16053 Atta cephalotes ACEP16053 N 0.000
ACEP16062 Atta cephalotes ACEP16062 N 0.000
ADAC003415 Anopheles darlingi ADAC003415 N 0.000
AGAP011711 Anopheles gambiae AGAP011711 N 0.000
BGIBMGA012897 Bombyx mori BGIBMGA012897 N 0.000
ENSACAG00000021966 Anolis carolinensis ENSACAG00000021966 N 0.000
TBR1 Choloepus hoffmanni ENSCHOG00000006154 N 0.000
ENSLACG00000004796 Latimeria chalumnae ENSLACG00000004796 N 0.000
ENSOANG00000030458 Ornithorhynchus anatinus ENSOANG00000030458 N 0.000
ENSPMAG00000002216 Petromyzon marinus ENSPMAG00000002216 N 0.000
TBX19 Tupaia belangeri ENSTBEG00000000750 N 0.000
GG18705 Drosophila erecta FBgn0110914 N 0.000
KGM_15499 Danaus plexippus KGM_15499 N 0.000
L798_14237 Zootermopsis nevadensis L798_14237 N 0.000
AEPI001846 Anopheles epiroticus AEPI001846 N 0.000
RPRC007267 Rhodnius prolixus RPRC007267 N 0.000
SINV10896 Solenopsis invicta SINV10896 N 0.000
SINV19991 Solenopsis invicta SINV19991 N 0.000
Ocbimv22001570m.g Octopus bimaculoides Ocbimv22001570m.g N 0.000
LDEC003105 Leptinotarsa decemlineata LDEC003105 N 0.000
SNAPOd2T00025689001 Oikopleura dioica SNAPOd2T00025689001 N 0.000
AALB008494 Anopheles albimanus AALB008494 N 0.000
AARA000519 Anopheles arabiensis AARA000519 N 0.000
AARA011012 Anopheles arabiensis AARA011012 N 0.000
AATE002306 Anopheles atroparvus AATE002306 N 0.000
ACUA015629 Anopheles culicifacies ACUA015629 N 0.000
ADIR000206 Anopheles dirus ADIR000206 N 0.000
ADIR010893 Anopheles dirus ADIR010893 N 0.000
WUBG_08150 Wuchereria bancrofti WUBG_08150 N 0.000