cassava15247.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava15247.m1 T257177_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava15247.m1 MADS box 10 54

Links

Other MADS box family TFs
Other Manihot esculenta TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HmN_000065900 Hymenolepis microstoma HmN_000065900 N 0.000
AMAM002480 Anopheles maculatus AMAM002480 N 0.000
AMIN008664 Anopheles minimus AMIN008664 N 0.000
A_03823 Schistosoma haematobium A_03823 N 0.000
csin106540 Clonorchis sinensis csin106540 N 0.000
D915_01091 Fasciola hepatica D915_01091 N 0.000
DILT_0001089701 Diphyllobothrium latum DILT_0001089701 N 0.000
ECANG7_04410 Echinococcus canadensis ECANG7_04410 N 0.000
EmuJ_001187700 Echinococcus multilocularis EmuJ_001187700 N 0.000
HDID_0000819001 Hymenolepis diminuta HDID_0000819001 N 0.000
ACUA008027 Anopheles culicifacies ACUA008027 N 0.000
HNAJ_0000675501 Hymenolepis nana HNAJ_0000675501 N 0.000
nRc.2.0.1.g17886 Romanomermis culicivorax nRc.2.0.1.g17886 N 0.000
scaffold164-EXSNAP2012.18 Pristionchus exspectatus scaffold164-EXSNAP2012.18 N 0.000
SMRZ_0002157401 Schistosoma margrebowiei SMRZ_0002157401 N 0.000
SPER_0000373001 Spirometra erinaceieuropaei SPER_0000373001 N 0.000
SPER_0002845401 Spirometra erinaceieuropaei SPER_0002845401 N 0.000
T265_00769 Opisthorchis viverrini T265_00769 N 0.000
TsM_000501300 Taenia solium TsM_000501300 N 0.000
TTAC_0000153401 Hydatigera taeniaeformis TTAC_0000153401 N 0.000
Smp_008830 Schistosoma mansoni Smp_008830 N 0.000
EFV57612 Trichinella spiralis EFV57612 N 0.000
EFV57661 Trichinella spiralis EFV57661 N 0.000
swi/snf Ciona intestinalis ENSCING00000004110 N 0.000
ENSCSAVG00000004620 Ciona savignyi ENSCSAVG00000004620 N 0.000
Smarca5 Rattus norvegicus ENSRNOG00000021584 N 0.000
HMEL004008 Heliconius melpomene HMEL004008 N 0.000
L798_15354 Zootermopsis nevadensis L798_15354 N 0.000
LotgiG182249 Lottia gigantea LotgiG182249 N 0.000
SMAR014171 Strigamia maritima SMAR014171 N 0.000
CGI_10021531 Crassostrea gigas CGI_10021531 N 0.000
SPU_016575 Strongylocentrotus purpuratus SPU_016575 N 0.000
tetur03g08660 Tetranychus urticae tetur03g08660 N 0.000
YQE_02907 Dendroctonus ponderosae YQE_02907 N 0.000
Ocbimv22035363m.g Octopus bimaculoides Ocbimv22035363m.g N 0.000
Sakowv30022101m.g Saccoglossus kowalevskii Sakowv30022101m.g N 0.000
LDEC005088 Leptinotarsa decemlineata LDEC005088 N 0.000
Sjc_0053770 Schistosoma japonicum Sjc_0053770 N 0.000
SMU15038703 Schmidtea mediterranea SMU15038703 N 0.000