fgenesh1_pg.scaffold_163000049 (Physcomitrella patens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 fgenesh1_pg.scaffold_163000049 T257350_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.708 0.708
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_163000049 MADS box 10 57

Links

Other MADS box family TFs
Other Physcomitrella patens TFs

502 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_08035 Aspergillus nidulans CADANIAG00004056 D
HSF4 Homo sapiens ENSG00000102878 D
AMAG_04835 Allomyces macrogynus AMAG_04835 I
CIMG_06399 Coccidioides immitis CIMG_06399 I
MCYG_02012 Microsporum canis MCYG_02012 I
PGUG_00225 Candida guilliermondii PGUG_00225 I
RO3G_03272 Rhizopus oryzae RO3G_03272 I
RO3G_12112 Rhizopus oryzae RO3G_12112 I
RO3G_17136 Rhizopus oryzae RO3G_17136 I
SPPG_07283 Spizellomyces punctatus SPPG_07283 I
A1O1_01785 Capronia coronata A1O1_01785 I
A1O3_00442 Capronia epimyces A1O3_00442 I
A1O5_01181 Cladophialophora psammophila A1O5_01181 I
A1O7_04739 Cladophialophora yegresii A1O7_04739 I
A1O9_01575 Exophiala aquamarina A1O9_01575 I
AAEL010319 Aedes aegypti AAEL010319 I
ACRE_024160 Acremonium chrysogenum ACRE_024160 I
AGABI2DRAFT_191939 Agaricus bisporus AGABI2DRAFT_191939 I
AGAP011082 Anopheles gambiae AGAP011082 I
AGOS_AFL085C Ashbya gossypii AGOS_AFL085C I
BBA_04597 Beauveria bassiana BBA_04597 I
BDDG_04090 Blastomyces dermatitidis BDDG_04090 I
BN946_scf185014.g111 Trametes cinnabarina BN946_scf185014.g111 I
BN946_scf185014.g98 Trametes cinnabarina BN946_scf185014.g98 I
BN946_scf185043.g94 Trametes cinnabarina BN946_scf185043.g94 I
BOTBODRAFT_55238 Botryobasidium botryosum BOTBODRAFT_55238 I
ACLA_003360 Aspergillus clavatus CADACLAG00000265 I
CADAFLAG00001879 Aspergillus flavus CADAFLAG00001879 I
AFUA_5G01900 Aspergillus fumigatus CADAFUAG00002829 I
CADANGAG00012647 Aspergillus niger CADANGAG00012647 I
CADAORAG00001853 Aspergillus oryzae CADAORAG00001853 I
ATEG_09811 Aspergillus terreus CADATEAG00005526 I
NFIA_040210 Neosartorya fischeri CADNFIAG00003371 I
CaO19.12238 Candida albicans CaO19.12238 I
CaO19.4775 Candida albicans CaO19.4775 I
CC1G_01262 Coprinopsis cinerea CC1G_01262 I
CPC735_029030 Coccidioides posadasii CPC735_029030 I
CY34DRAFT_301446 Suillus luteus CY34DRAFT_301446 I
CY34DRAFT_71248 Suillus luteus CY34DRAFT_71248 I
DEHA2A03608g Debaryomyces hansenii DEHA2A03608g I
Ecym_2208 Eremothecium cymbalariae Ecym_2208 I
EHI_087630 Entamoeba histolytica EHI_087630 I
ENSACAG00000003529 Anolis carolinensis ENSACAG00000003529 I
ENSAMEG00000017238 Ailuropoda melanoleuca ENSAMEG00000017238 I
HSF4 Bos taurus ENSBTAG00000003514 I
HSF4 Canis familiaris ENSCAFG00000020379 I
HSF4 Cavia porcellus ENSCPOG00000010834 I
ENSCSAG00000003768 Chlorocebus sabaeus ENSCSAG00000003768 I
Hsf4 Dipodomys ordii ENSDORG00000015128 I
HSF4 Equus caballus ENSECAG00000016708 I
HSF4 Felis catus ENSFCAG00000014099 I
HSF4 Gorilla gorilla ENSGGOG00000011899 I
HSF4 Loxodonta africana ENSLAFG00000021984 I
HSF4 Myotis lucifugus ENSMLUG00000011083 I
HSF4 Macaca mulatta ENSMMUG00000005906 I
ENSMPUG00000005418 Mustela putorius furo ENSMPUG00000005418 I
Hsf4 Mus musculus ENSMUSG00000033249 I
ENSNLEG00000004338 Nomascus leucogenys ENSNLEG00000004338 I
ENSOARG00000002740 Ovis aries ENSOARG00000002740 I
HSF4 Oryctolagus cuniculus ENSOCUG00000010001 I
HSF4 Otolemur garnettii ENSOGAG00000001391 I
HSF4 Ochotona princeps ENSOPRG00000015074 I
ENSPANG00000005017 Papio anubis ENSPANG00000005017 I
ENSPPYG00000007441 Pongo abelii ENSPPYG00000007441 I
HSF4 Pan troglodytes ENSPTRG00000034007 I
HSF4 Pteropus vampyrus ENSPVAG00000000402 I
Hsf4 Rattus norvegicus ENSRNOG00000015253 I
HSF4 Sus scrofa ENSSSCG00000002792 I
ENSSTOG00000027009 Ictidomys tridecemlineatus ENSSTOG00000027009 I
HSF4 Tursiops truncatus ENSTTRG00000010241 I
EURHEDRAFT_466545 Aspergillus ruber EURHEDRAFT_466545 I
FIBRA_02011 Fibroporia radiculosa FIBRA_02011 I
FOMPIDRAFT_1029188 Fomitopsis pinicola FOMPIDRAFT_1029188 I
FOMPIDRAFT_1100359 Fomitopsis pinicola FOMPIDRAFT_1100359 I
G210_5457 Candida maltosa G210_5457 I
G647_03938 Cladophialophora carrionii G647_03938 I
GALMADRAFT_219369 Galerina marginata GALMADRAFT_219369 I
GALMADRAFT_77741 Galerina marginata GALMADRAFT_77741 I
GLOINDRAFT_240353 Rhizophagus irregularis GLOINDRAFT_240353 I
GLOINDRAFT_75775 Rhizophagus irregularis GLOINDRAFT_75775 I
GLOTRDRAFT_109755 Gloeophyllum trabeum GLOTRDRAFT_109755 I
GNLVRS01_PISO0I05618g Millerozyma farinosa GNLVRS01_PISO0I05618g I
GNLVRS01_PISO0J07423g Millerozyma farinosa GNLVRS01_PISO0J07423g I
GYMLUDRAFT_230418 Gymnopus luxurians GYMLUDRAFT_230418 I
H072_1515 Dactylellina haptotyla H072_1515 I
HETIRDRAFT_242938 Heterobasidion irregulare HETIRDRAFT_242938 I
HETIRDRAFT_444169 Heterobasidion irregulare HETIRDRAFT_444169 I
HMPREF1120_03187 Exophiala dermatitidis HMPREF1120_03187 I
HYDPIDRAFT_32921 Hydnomerulius pinastri HYDPIDRAFT_32921 I
J056_002394 Wallemia ichthyophaga J056_002394 I
JAAARDRAFT_67635 Jaapia argillacea JAAARDRAFT_67635 I
K443DRAFT_105640 Laccaria amethystina K443DRAFT_105640 I
K443DRAFT_672418 Laccaria amethystina K443DRAFT_672418 I
K443DRAFT_89912 Laccaria amethystina K443DRAFT_89912 I
L804_02322 Cryptococcus gattii L804_02322 I
LACBIDRAFT_147701 Laccaria bicolor LACBIDRAFT_147701 I
LACBIDRAFT_311992 Laccaria bicolor LACBIDRAFT_311992 I
M378DRAFT_74283 Amanita muscaria M378DRAFT_74283 I
M378DRAFT_8823 Amanita muscaria M378DRAFT_8823 I
M404DRAFT_154909 Pisolithus tinctorius M404DRAFT_154909 I
M404DRAFT_19500 Pisolithus tinctorius M404DRAFT_19500 I
M407DRAFT_3685 Tulasnella calospora M407DRAFT_3685 I
M408DRAFT_64444 Serendipita vermifera M408DRAFT_64444 I
M413DRAFT_23778 Hebeloma cylindrosporum M413DRAFT_23778 I
M413DRAFT_440933 Hebeloma cylindrosporum M413DRAFT_440933 I
MCYG_02012 Arthroderma otae MCYG_02012 I
Moror_17584 Moniliophthora roreri Moror_17584 I
Moror_7427 Moniliophthora roreri Moror_7427 I
MVLG_00322 Microbotryum violaceum MVLG_00322 I
PAAG_08464 Paracoccidioides sp lutzii PAAG_08464 I
PABG_00020 Paracoccidioides brasiliensis PABG_00020 I
PAXRUDRAFT_129995 Paxillus rubicundulus PAXRUDRAFT_129995 I
PGTG_06588 Puccinia graminis PGTG_06588 I
PGUG_00225 Meyerozyma guilliermondii PGUG_00225 I
PHACADRAFT_250335 Phanerochaete carnosa PHACADRAFT_250335 I
PHLGIDRAFT_68835 Phlebiopsis gigantea PHLGIDRAFT_68835 I
PIIN_01911 Piriformospora indica PIIN_01911 I
PISMIDRAFT_106875 Pisolithus microcarpus PISMIDRAFT_106875 I
PISMIDRAFT_86746 Pisolithus microcarpus PISMIDRAFT_86746 I
PNEG_02594 Pneumocystis murina PNEG_02594 I
PTTG_05194 Puccinia triticina PTTG_05194 I
PV04_04511 Capronia semiimmersa PV04_04511 I
PV05_06211 Exophiala xenobiotica PV05_06211 I
PV06_08883 Exophiala oligosperma PV06_08883 I
PV07_05328 Cladophialophora immunda PV07_05328 I
PV08_09369 Exophiala spinifera PV08_09369 I
PVAR5_0686 Byssochlamys spectabilis PVAR5_0686 I
RHTO_01429 Rhodosporidium toruloides RHTO_01429 I
RHTO_06861 Rhodosporidium toruloides RHTO_06861 I
RTG_02995 Rhodotorula glutinis RTG_02995 I
SAPIO_CDS6676 Scedosporium apiospermum SAPIO_CDS6676 I
SCHCODRAFT_255161 Schizophyllum commune SCHCODRAFT_255161 I
SERLA73DRAFT_166349 Serpula lacrymans SERLA73DRAFT_166349 I
SERLA73DRAFT_60481 Serpula lacrymans SERLA73DRAFT_60481 I
TBLA_0A02000 Tetrapisispora blattae TBLA_0A02000 I
TBLA_0G02700 Tetrapisispora blattae TBLA_0G02700 I
UREG_04004 Uncinocarpus reesii UREG_04004 I
YQE_02436 Dendroctonus ponderosae YQE_02436 I
Z517_06439 Fonsecaea pedrosoi Z517_06439 I
Z518_00834 Rhinocladiella mackenziei Z518_00834 I
Z519_08449 Cladophialophora bantiana Z519_08449 I
EDI_180060 Entamoeba dispar EDI_180060 I
EIN_310700 Entamoeba invadens EIN_310700 I
ENSBTAP00000004568-D1 Bos grunniens ENSBTAP00000004568-D1 I
Pvit_13286 Pogona vitticeps Pvit_13286 I
e_gw1.1.2474.1 Mucor circinelloides e_gw1.1.2474.1 I
e_gw1.6.1274.1 Mucor circinelloides e_gw1.6.1274.1 I
estExt_Genewise1.C_20646 Mucor circinelloides estExt_Genewise1.C_20646 I
fgenesh1_pg.C_scaffold_2000392 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_2000392 I
fgenesh1_pg.C_scaffold_8000068 Sporobolomyces roseus fgenesh1_pg.C_scaffold_8000068 I
gw1.3.1948.1 Mucor circinelloides gw1.3.1948.1 I
LCUP016473 Lucilia cuprina LCUP016473 I
e_gw1.00168.79.1 Aspergillus carbonarius e_gw1.00168.79.1 I
gw1.2.1743.1 Heterobasidion annosum gw1.2.1743.1 I
AATE001173 Anopheles atroparvus AATE001173 I
ACHR001316 Anopheles christyi ACHR001316 I
ACOM023042 Anopheles coluzzii ACOM023042 I
AFAF007194 Anopheles farauti AFAF007194 I
AFUN004137 Anopheles funestus AFUN004137 I
AMEC006872 Anopheles melas AMEC006872 I
AMIN008510 Anopheles minimus AMIN008510 I
MDOA007596 Musca domestica MDOA007596 I
BXY_0882000 Bursaphelenchus xylophilus BXY_0882000 I
EEL_0000787901 Elaeophora elaphi EEL_0000787901 I
A1Q1_07589 Trichosporon asahii A1Q1_07589 N
A1Q1_08111 Trichosporon asahii A1Q1_08111 N
CERSUDRAFT_111157 Ceriporiopsis subvermispora CERSUDRAFT_111157 N
CNB05180 Cryptococcus neoformans CNB05180 N
DACRYDRAFT_24973 Dacryopinax sp DACRYDRAFT_24973 N
FIBRA_09002 Fibroporia radiculosa FIBRA_09002 N
GUITHDRAFT_92699 Guillardia theta GUITHDRAFT_92699 N
GYMLUDRAFT_47339 Gymnopus luxurians GYMLUDRAFT_47339 N
GYMLUDRAFT_62193 Gymnopus luxurians GYMLUDRAFT_62193 N
JAAARDRAFT_238259 Jaapia argillacea JAAARDRAFT_238259 N
PHLGIDRAFT_61312 Phlebiopsis gigantea PHLGIDRAFT_61312 N
PIIN_01101 Piriformospora indica PIIN_01101 N
PILCRDRAFT_1250 Piloderma croceum PILCRDRAFT_1250 N
PLEOSDRAFT_1089027 Pleurotus ostreatus PLEOSDRAFT_1089027 N
POSPLDRAFT_98337 Postia placenta POSPLDRAFT_98337 N
SCLCIDRAFT_104731 Scleroderma citrinum SCLCIDRAFT_104731 N
fgeneshTM_pg.1_#_391 Tremella mesenterica fgeneshTM_pg.1_#_391 N