Cagra.1216s0008 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.1216s0008 T257678_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a 		0.721 0.721
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1216s0008.1.p MADS box 12 60

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF454 Homo sapiens ENSG00000178187 D
ENSNLEG00000001430 Nomascus leucogenys ENSNLEG00000001430 I
ENSP00000326249 Macaca fascicularis ENSP00000326249 I
ENSBTAP00000016859-D1 Bos grunniens ENSBTAP00000016859-D1 I
ZNF454 Tursiops truncatus ENSTTRG00000012880 I
ZNF454 Tupaia belangeri ENSTBEG00000000346 I
ZNF454 Sus scrofa ENSSSCG00000027351 I
Znf454 Rattus norvegicus ENSRNOG00000022971 I
ZNF454 Pteropus vampyrus ENSPVAG00000007676 I
ZNF454 Pan troglodytes ENSPTRG00000017611 I
ENSPANG00000009509 Papio anubis ENSPANG00000009509 I
ZNF454 Ochotona princeps ENSOPRG00000009035 I
ZNF454 Oryctolagus cuniculus ENSOCUG00000029119 I
ENSOARG00000004411 Ovis aries ENSOARG00000004411 I
ZNF454 Bos taurus ENSBTAG00000004262 I
Zfp454 Mus musculus ENSMUSG00000048728 I
ENSMPUG00000000725 Mustela putorius furo ENSMPUG00000000725 I
ENSMMUG00000008980 Macaca mulatta ENSMMUG00000008980 I
ZNF454 Myotis lucifugus ENSMLUG00000002894 I
ZNF454 Gorilla gorilla ENSGGOG00000022508 I
ZNF454 Erinaceus europaeus ENSEEUG00000007684 I
ZNF454 Equus caballus ENSECAG00000005115 I
ENSCSAG00000008562 Chlorocebus sabaeus ENSCSAG00000008562 I
ZNF454 Callithrix jacchus ENSCJAG00000018857 I
ZNF454 Choloepus hoffmanni ENSCHOG00000002770 I
ZNF454 Canis familiaris ENSCAFG00000031168 I