CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10039580.g
(
Linum usitatissimum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Lus10039580.g
T258630_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.854
0.854
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.854
0.854
AGL15
M10927_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.854
0.854
AGL15
M10928_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.854
0.854
squamosa
M02697_2.00
Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK
SELEX
Mathelier et al.(2014)
MA0082.1
0.812
0.812
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.812
0.812
SOC1
M10915_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.812
0.812
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.812
0.812
Q7X9I6_MALDO
M11023_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS12_02
0.812
0.812
Q38742_ANTMA
M11000_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SQUA_01
0.812
0.812
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.792
0.792
SEP1
M02696_2.00
Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN
SELEX
Mathelier et al.(2014)
MA0584.1
0.792
0.792
SEP3
M08143_2.00
Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG
ChIP-seq
Mathelier et al.(2014)
MA0563.1
0.792
0.792
SEP1
M10929_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_01
0.792
0.792
SEP1
M10930_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_02
0.792
0.792
SEP3
M10902_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL9_01
0.792
0.792
Q9LEI1_HORVU
M10984_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM7_01
0.792
0.792
AGL9_PETHY
M10993_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP2_01
0.792
0.792
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.792
0.792
Q9ATE7_PETHY
M11010_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP22_01
0.792
0.792
Q9ATE6_PETHY
M11009_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP23_01
0.792
0.792
Q9ATF3_PETHY
M11015_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP4_01
0.792
0.792
O82084_MALDO
M11018_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_01
0.792
0.792
MADS1
M10969_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_02
0.792
0.792
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.792
0.792
Q6UGQ8_PETHY
M11005_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS12_01
0.792
0.792
MAD17_ORYSJ
M10961_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.792
0.792
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.792
0.792
O82695_MALDO
M11019_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_01
0.792
0.792
MADS5
M10970_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_02
0.792
0.792
MADS6
M10967_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.792
0.792
MADS7
M10975_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_02
0.792
0.792
MADS8
M10976_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_01
0.792
0.792
Q9SBA6_MALDO
M11028_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_02
0.792
0.792
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.771
0.771
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.771
0.771
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.771
0.771
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.771
0.771
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.771
0.771
MLOC_61901
M10964_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM8_01
0.771
0.771
Q9LEH9_HORVU
M10983_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM9_01
0.771
0.771
Q9ATE2_PETHY
M11007_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP29_01
0.771
0.771
Q9ATF1_PETHY
M11013_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP9_01
0.771
0.771
O82699_MALDO
M11022_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.771
0.771
Q9ZRA5_MALDO
M11030_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_04
0.771
0.771
Q9FR84_MAIZE
M10981_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_03
0.771
0.771
Q9ST54_MALDO
M11029_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_04
0.771
0.771
Q9LM09_TOBAC
M11016_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS4_01
0.771
0.771
O82697_MALDO
M11020_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_01
0.771
0.771
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.771
0.771
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.771
0.771
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.771
0.771
Q84LI3_WHEAT
M10979_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAVRT1_01
0.771
0.771
O82128_WHEAT
M10965_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WAP1_01
0.771
0.771
Q41829_MAIZE
M10977_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_02
0.771
0.771
AGL13
M06989_2.00
Arabidopsis thaliana
WTWCYHAAAAWRGWAADW
WHTTWCYWTTTTDRGWAW
Dap-seq
OMalley et al.(2016)
AGL13_col_b
0.750
0.750
AGL3
M02693_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
SELEX
Mathelier et al.(2014)
MA0001.2
0.750
0.750
AP1
M08144_2.00
Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK
ChIP-seq
Mathelier et al.(2014)
MA0940.1
0.750
0.750
AGL12
M10906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.750
0.750
AGL3
M10908_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
Transfac
Matys et al.(2006)
P$AGL3_01
0.750
0.750
AGL3
M10909_2.00
Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN
Transfac
Matys et al.(2006)
P$AGL3_02
0.750
0.750
AGL3
M10910_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL3_03
0.750
0.750
SEP2
M10916_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL4_01
0.750
0.750
Q9LEI3_HORVU
M10985_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM3_01
0.750
0.750
Q9ATE9_PETHY
M11012_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP20_01
0.750
0.750
FBP24_PETHY
M10997_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.750
0.750
Q9ATF2_PETHY
M11014_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP5_01
0.750
0.750
Q8GT99_TOBAC
M11006_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_02
0.750
0.750
MAD14_ORYSJ
M10960_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_01
0.750
0.750
MADS15
M10972_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_01
0.750
0.750
MADS18
M10973_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS18_01
0.750
0.750
AP1
M10905_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSA_Q2
0.750
0.750
Q9SBQ1_PETHY
M11017_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PFG_01
0.750
0.750
AGL42
M06995_2.00
Arabidopsis thaliana
RATGATG
CATCATY
Dap-seq
OMalley et al.(2016)
AGL42_col_a
0.729
0.729
A1YJE4_HORVD
M10900_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM10_01
0.729
0.729
M17_MAIZE
M10959_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.729
0.729
O82698_MALDO
M11021_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS10_01
0.729
0.729
Q8VWZ2_MALDO
M11024_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_02
0.729
0.729
AGL1
M02694_2.00
Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN
SELEX
Mathelier et al.(2014)
MA0585.1
0.708
0.708
AG
M02695_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD
SELEX
Mathelier et al.(2014)
MA0005.2
0.708
0.708
AG
M10923_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD
Transfac
Matys et al.(2006)
P$AG_01
0.708
0.708
AG
M10924_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_02
0.708
0.708
AG
M10925_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_03
0.708
0.708
AG_TOBAC
M10995_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG1_02
0.708
0.708
AGL1
M10920_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_01
0.708
0.708
AGL1
M10921_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_02
0.708
0.708
AG
M10926_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_Q2
0.708
0.708
Q08711_PETHY
M10999_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP6_01
0.708
0.708
Q8VWZ3_MALDO
M11025_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_02
0.708
0.708
MADS16
M10971_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.708
0.708
MADS3_ORYSJ
M10963_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_01
0.708
0.708
AG_PETHY
M10994_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_02
0.708
0.708
SHP2
M10914_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SHP2_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10039580
MADS box
10
57
RIENANSRQVTFSKRRTGLLKKAHELSILCDAEVAVIIFSNTGKLFEF
Links
Other
MADS box
family TFs
Other
Linum usitatissimum
TFs
1692 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSTNIG00000006126
Tetraodon nigroviridis
ENSTNIG00000006126
N
0.000
ENSOGAG00000032105
Otolemur garnettii
ENSOGAG00000032105
N
0.000
ENSONIG00000009063
Oreochromis niloticus
ENSONIG00000009063
N
0.000
ENSOPRG00000000311
Ochotona princeps
ENSOPRG00000000311
N
0.000
ENSORLG00000005855
Oryzias latipes
ENSORLG00000005855
N
0.000
ENSPANG00000010800
Papio anubis
ENSPANG00000010800
N
0.000
ENSPFOG00000007955
Poecilia formosa
ENSPFOG00000007955
N
0.000
ENSPPYG00000003246
Pongo abelii
ENSPPYG00000003246
N
0.000
ENSPSIG00000005217
Pelodiscus sinensis
ENSPSIG00000005217
N
0.000
ZFP91
Pan troglodytes
ENSPTRG00000029949
N
0.000
Zfp91
Rattus norvegicus
ENSRNOG00000012524
N
0.000
ENSSARG00000013155
Sorex araneus
ENSSARG00000013155
N
0.000
ENSSHAG00000006526
Sarcophilus harrisii
ENSSHAG00000006526
N
0.000
ENSSSCG00000013155
Sus scrofa
ENSSSCG00000013155
N
0.000
ENSTBEG00000011227
Tupaia belangeri
ENSTBEG00000011227
N
0.000
ENSTGUG00000007128
Taeniopygia guttata
ENSTGUG00000007128
N
0.000
ENSOCUG00000005385
Oryctolagus cuniculus
ENSOCUG00000005385
N
0.000
ENSTRUG00000001110
Takifugu rubripes
ENSTRUG00000001110
N
0.000
ENSTSYG00000010631
Tarsius syrichta
ENSTSYG00000010631
N
0.000
ENSVPAG00000006317
Vicugna pacos
ENSVPAG00000006317
N
0.000
ENSXMAG00000009884
Xiphophorus maculatus
ENSXMAG00000009884
N
0.000
Afo_R013450
Aptenodytes forsteri
Afo_R013450
N
0.000
Alligator_sinensis_CCG022153.1
Alligator sinensis
Alligator_sinensis_CCG022153.1
N
0.000
Cmyd_10004958
Chelonia mydas
Cmyd_10004958
N
0.000
ENSP00000339030-D1
Bos grunniens
ENSP00000339030-D1
N
0.000
ENSP00000339030
Macaca fascicularis
ENSP00000339030
N
0.000
Gfo_R011905
Geospiza fortis
Gfo_R011905
N
0.000
Myotis_brandtii_ZFP91_10002181
Myotis brandtii
Myotis_brandtii_ZFP91_10002181
N
0.000
Ogr13692
Ophisaurus gracilis
Ogr13692
N
0.000
Pvit_00119
Pogona vitticeps
Pvit_00119
N
0.000
Tal_R001381
Tyto alba
Tal_R001381
N
0.000
zfp91
Xenopus tropicalis
XB-GENE-6000457
N
0.000
ENSGACG00000019434
Gasterosteus aculeatus
ENSGACG00000019434
N
0.000
ENSAMEG00000000835
Ailuropoda melanoleuca
ENSAMEG00000000835
N
0.000
ENSAPLG00000006822
Anas platyrhynchos
ENSAPLG00000006822
N
0.000
ENSBTAG00000024657
Bos taurus
ENSBTAG00000024657
N
0.000
ENSCAFG00000007675
Canis familiaris
ENSCAFG00000007675
N
0.000
ENSCJAG00000008421
Callithrix jacchus
ENSCJAG00000008421
N
0.000
ENSCPOG00000011753
Cavia porcellus
ENSCPOG00000011753
N
0.000
ENSCSAG00000006026
Chlorocebus sabaeus
ENSCSAG00000006026
N
0.000
si:ch211-113e8.10
Danio rerio
ENSDARG00000079631
N
0.000
ENSDNOG00000043611
Dasypus novemcinctus
ENSDNOG00000043611
N
0.000
Zfp91
Dipodomys ordii
ENSDORG00000013985
N
0.000
ENSECAG00000002280
Equus caballus
ENSECAG00000002280
N
0.000
ENSEEUG00000002360
Erinaceus europaeus
ENSEEUG00000002360
N
0.000
ENSFALG00000010996
Ficedula albicollis
ENSFALG00000010996
N
0.000
ENSFCAG00000009945
Felis catus
ENSFCAG00000009945
N
0.000
ZFP91
Homo sapiens
ENSG00000186660
N
0.000
ENSACAG00000006811
Anolis carolinensis
ENSACAG00000006811
N
0.000
ENSGALG00000007287
Gallus gallus
ENSGALG00000007287
N
0.000
ENSGGOG00000026119
Gorilla gorilla
ENSGGOG00000026119
N
0.000
ENSLAFG00000011508
Loxodonta africana
ENSLAFG00000011508
N
0.000
ENSLOCG00000007033
Lepisosteus oculatus
ENSLOCG00000007033
N
0.000
ENSMEUG00000006553
Macropus eugenii
ENSMEUG00000006553
N
0.000
ENSMGAG00000009741
Meleagris gallopavo
ENSMGAG00000009741
N
0.000
ENSMLUG00000009869
Myotis lucifugus
ENSMLUG00000009869
N
0.000
ENSMMUG00000011714
Macaca mulatta
ENSMMUG00000011714
N
0.000
ENSMODG00000020173
Monodelphis domestica
ENSMODG00000020173
N
0.000
ENSMPUG00000000298
Mustela putorius furo
ENSMPUG00000000298
N
0.000
Zfp91
Mus musculus
ENSMUSG00000024695
N
0.000
ENSNLEG00000013034
Nomascus leucogenys
ENSNLEG00000013034
N
0.000
ENSOANG00000004512
Ornithorhynchus anatinus
ENSOANG00000004512
N
0.000
ENSOARG00000003340
Ovis aries
ENSOARG00000003340
N
0.000
ENSOARG00000011184
Ovis aries
ENSOARG00000011184
N
0.000