PredSwiss_CON2646.1 (Pneumocystis carinii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 PredSwiss_CON2646.1 T259269_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.917 0.917
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.896 0.896
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.896 0.896
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.896 0.896
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.896 0.896
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.896 0.896
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.896 0.896
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.812 0.812
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.812 0.812
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.812 0.812
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.812 0.812
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.812 0.812
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.812 0.812
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.812 0.812
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.812 0.812
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.812 0.812
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.812 0.812
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.812 0.812
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.812 0.812
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.812 0.812
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.812 0.812
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.812 0.812
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.812 0.812
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.812 0.812
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.812 0.812
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.812 0.812
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.812 0.812
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.812 0.812
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.812 0.812
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.771 0.771
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.771 0.771
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.729 0.729
ARG80
M08426_2.00 		Saccharomyces cerevisiae
WGACDC
GHGTCW		 ChIP-chip
Mathelier et al.(2014)
MA0271.1 		0.708 0.708
ARG80
M08588_2.00 		Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR
YTDYCNHVBNVGBHNN		 Misc
DeBoer et al.(2011)
YMR042W_1483 		0.708 0.708
ARG80
M10989_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ARGRI_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PredSwiss_CON2646.1 MADS box 45 92

Links

Other MADS box family TFs
Other Pneumocystis carinii TFs

478 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSTGUG00000007131 Taeniopygia guttata ENSTGUG00000007131 N 0.000
ZBTB46 Oryctolagus cuniculus ENSOCUG00000026351 N 0.000
ZBTB46 Otolemur garnettii ENSOGAG00000000852 N 0.000
ENSONIG00000017400 Oreochromis niloticus ENSONIG00000017400 N 0.000
zbtb46 Oryzias latipes ENSORLG00000009686 N 0.000
ENSPFOG00000005845 Poecilia formosa ENSPFOG00000005845 N 0.000
ENSPSIG00000015887 Pelodiscus sinensis ENSPSIG00000015887 N 0.000
ZBTB46 Pan troglodytes ENSPTRG00000013754 N 0.000
Zbtb46 Rattus norvegicus ENSRNOG00000014592 N 0.000
ENSSHAG00000017616 Sarcophilus harrisii ENSSHAG00000017616 N 0.000
ENSSTOG00000012003 Ictidomys tridecemlineatus ENSSTOG00000012003 N 0.000
ZBTB46 Ornithorhynchus anatinus ENSOANG00000004930 N 0.000
ENSTNIG00000017877 Tetraodon nigroviridis ENSTNIG00000017877 N 0.000
zbtb46 Takifugu rubripes ENSTRUG00000004720 N 0.000
Afo_R011602 Aptenodytes forsteri Afo_R011602 N 0.000
ENSP00000303102-D1 Bos grunniens ENSP00000303102-D1 N 0.000
Myotis_brandtii_Zbtb46_10023447 Myotis brandtii Myotis_brandtii_Zbtb46_10023447 N 0.000
Ogr02171 Ophisaurus gracilis Ogr02171 N 0.000
Pvit_01331 Pogona vitticeps Pvit_01331 N 0.000
zbtb46 Xenopus tropicalis XB-GENE-5847062 N 0.000
zbtb46.S Xenopus laevis XB-GENE-5847067 N 0.000
XP_002944155 Xenopus tropicalis XP_002944155 N 0.000
ZBTB46 Gorilla gorilla ENSGGOG00000004815 N 0.000
ENSAMXG00000017494 Astyanax mexicanus ENSAMXG00000017494 N 0.000
ENSAPLG00000014808 Anas platyrhynchos ENSAPLG00000014808 N 0.000
ZBTB46 Bos taurus ENSBTAG00000016667 N 0.000
ZBTB46 Callithrix jacchus ENSCJAG00000010439 N 0.000
ZBTB46 Cavia porcellus ENSCPOG00000002803 N 0.000
ENSCSAG00000016647 Chlorocebus sabaeus ENSCSAG00000016647 N 0.000
zbtb46 Danio rerio ENSDARG00000078191 N 0.000
ENSFALG00000005952 Ficedula albicollis ENSFALG00000005952 N 0.000
ZBTB46 Homo sapiens ENSG00000130584 N 0.000
ZBTB46 Gallus gallus ENSGALG00000006062 N 0.000
ZBTB46 Anolis carolinensis ENSACAG00000003631 N 0.000
ENSLACG00000003648 Latimeria chalumnae ENSLACG00000003648 N 0.000
ZBTB46 Loxodonta africana ENSLAFG00000012490 N 0.000
ENSLOCG00000005130 Lepisosteus oculatus ENSLOCG00000005130 N 0.000
ENSMEUG00000015248 Macropus eugenii ENSMEUG00000015248 N 0.000
ZBTB46 Meleagris gallopavo ENSMGAG00000006811 N 0.000
ZBTB46 Microcebus murinus ENSMICG00000012871 N 0.000
ZBTB46 Myotis lucifugus ENSMLUG00000005283 N 0.000
ZBTB46 Macaca mulatta ENSMMUG00000020712 N 0.000
ZBTB46 Monodelphis domestica ENSMODG00000017020 N 0.000
Zbtb46 Mus musculus ENSMUSG00000027583 N 0.000