Scas_Contig721.18 (Saccharomyces castellii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Scas_Contig721.18 T259276_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.708 0.708
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig721.18 MADS box 10 57

Links

Other MADS box family TFs
Other Saccharomyces castellii TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SMP1 Saccharomyces cerevisiae YBR182C D 0.708
SKUD_178506 Saccharomyces kudriavzevii SKUD_178506 I 0.708
SAKL0H09416g Lachancea kluyveri SAKL0H09416g I 0.729
KLTH0E13156g Kluyveromyces thermotolerans KLTH0E13156g I 0.708
572_YBR182C Saccharomyces mikatae 572_YBR182C I 0.708
1735_Multiple Saccharomyces paradoxus 1735_Multiple I 0.708
Scas_Contig721.17 Saccharomyces castellii Scas_Contig721.17 I 1.000
Scas_Contig664.4 Saccharomyces castellii Scas_Contig664.4 I 0.750
ZYRO0A13464g Zygosaccharomyces rouxii ZYRO0A13464g I 0.771
TDEL_0A05090 Torulaspora delbrueckii TDEL_0A05090 I 0.750
TBLA_0H03770 Tetrapisispora blattae TBLA_0H03770 I 0.729
PGUG_02571 Candida guilliermondii PGUG_02571 I 0.708
PGUG_02571 Meyerozyma guilliermondii PGUG_02571 I 0.708
NDAI_0E02700 Naumovozyma dairenensis NDAI_0E02700 I 0.750
NCAS_0C01980 Naumovozyma castellii NCAS_0C01980 I 0.750
NCAS_0B02030 Naumovozyma castellii NCAS_0B02030 I 1.000
LALA0_S04e02938g Lachancea lanzarotensis LALA0_S04e02938g I 0.729
Kpol_1048p48 Vanderwaltozyma polyspora Kpol_1048p48 I 0.708
KLTH0E13156g Lachancea thermotolerans KLTH0E13156g I 0.708
KLLA0_E24025g Kluyveromyces lactis KLLA0_E24025g I 0.729
KAFR_0I00730 Kazachstania africana KAFR_0I00730 I 0.771
NDAI_0C05650 Naumovozyma dairenensis NDAI_0C05650 N 0.875