18574_YMR042W (Saccharomyces bayanus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 18574_YMR042W T259303_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARG80
M08426_2.00 		Saccharomyces cerevisiae
WGACDC
GHGTCW		 ChIP-chip
Mathelier et al.(2014)
MA0271.1 		1.000 1.000
ARG80
M08588_2.00 		Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR
YTDYCNHVBNVGBHNN		 Misc
DeBoer et al.(2011)
YMR042W_1483 		1.000 1.000
ARG80
M10989_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ARGRI_01 		1.000 1.000
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.771 0.771
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.771 0.771
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.771 0.771
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.771 0.771
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.771 0.771
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
18574_YMR042W MADS box 92 139

Links

Other MADS box family TFs
Other Saccharomyces bayanus TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI4G02060 Brachypodium distachyon BRADI4G02060 N 0.000
LPERR01G14420 Leersia perrieri LPERR01G14420 N 0.000
OBART01G16010 Oryza barthii OBART01G16010 N 0.000
OGLUM01G18710 Oryza glumaepatula OGLUM01G18710 N 0.000
OMERI01G14750 Oryza meridionalis OMERI01G14750 N 0.000
ONIVA01G18160 Oryza nivara ONIVA01G18160 N 0.000
OPUNC01G16830 Oryza punctata OPUNC01G16830 N 0.000
ORGLA01G0399300 Oryza glaberrima ORGLA01G0399300 N 0.000
ORUFI01G17760 Oryza rufipogon ORUFI01G17760 N 0.000