ANCDUO_13359 (Ancylostoma duodenale)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 ANCDUO_13359 T259533_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.875 0.875
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.875 0.875
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.875 0.875
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.833 0.833
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.833 0.833
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.833 0.833
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.833 0.833
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.833 0.833
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.833 0.833
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.833 0.833
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.833 0.833
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.833 0.833
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.833 0.833
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.833 0.833
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.833 0.833
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.833 0.833
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.833 0.833
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.833 0.833
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.833 0.833
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.833 0.833
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.833 0.833
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.833 0.833
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.833 0.833
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.833 0.833
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ANCDUO_13359 MADS box 71 94

Links

Other MADS box family TFs
Other Ancylostoma duodenale TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HAA1 Saccharomyces cerevisiae YPR008W D
YALI0_B08206g Yarrowia lipolytica YALI0_B08206g I
CLUG_03246 Candida lusitaniae CLUG_03246 I
LALA0_S09e06546g Lachancea lanzarotensis LALA0_S09e06546g I
LELG_03555 Lodderomyces elongisporus LELG_03555 I
NCAS_0B05730 Naumovozyma castellii NCAS_0B05730 I
NDAI_0B03070 Naumovozyma dairenensis NDAI_0B03070 I
PAS_chr3_0232 Komagataella pastoris PAS_chr3_0232 I
PGUG_05595 Meyerozyma guilliermondii PGUG_05595 I
PICST_66716 Scheffersomyces stipitis PICST_66716 I
SKUD_166403 Saccharomyces kudriavzevii SKUD_166403 I
SU7_3622 Saccharomyces arboricola SU7_3622 I
TBLA_0C00170 Tetrapisispora blattae TBLA_0C00170 I
TDEL_0C01350 Torulaspora delbrueckii TDEL_0C01350 I
TPHA_0D00690 Tetrapisispora phaffii TPHA_0D00690 I
KUCA_T00002063001 Kuraishia capsulata KUCA_T00002063001 I
ZBAI_01494 Zygosaccharomyces bailii ZBAI_01494 I
ZYRO0F04862g Zygosaccharomyces rouxii ZYRO0F04862g I
estExt_fgenesh1_pg.C_chr_1.20386 Pichia stipitis estExt_fgenesh1_pg.C_chr_1.20386 I
Scas_Contig710.11 Saccharomyces castellii Scas_Contig710.11 I
22312_YPR008W Saccharomyces mikatae 22312_YPR008W I
23384_YPR008W Saccharomyces paradoxus 23384_YPR008W I
25568_YPR008W Saccharomyces bayanus 25568_YPR008W I
KLTH0G16984g Kluyveromyces thermotolerans KLTH0G16984g I
Kwal_1543 Kluyveromyces waltii Kwal_1543 I
SAKL0B03344g Lachancea kluyveri SAKL0B03344g I
XP_002492448.1 Pichia pastoris XP_002492448.1 I
KNAG_0D02340 Kazachstania naganishii KNAG_0D02340 I
CPAG_03050 Candida parapsilosis CPAG_03050 I
PGUG_05595 Candida guilliermondii PGUG_05595 I
AACERI_AaceriAEL295C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAEL295C I
AGOS_AEL295C Ashbya gossypii AGOS_AEL295C I
BN7_4399 Wickerhamomyces ciferrii BN7_4399 I
CAGL0L09339g Candida glabrata CAGL0L09339g I
CANTEDRAFT_114577 Candida tenuis CANTEDRAFT_114577 I
CaO19.12468 Candida albicans CaO19.12468 I
CaO19.5001 Candida albicans CaO19.5001 I
CD36_12620 Candida dubliniensis CD36_12620 I
CLUG_03246 Clavispora lusitaniae CLUG_03246 I
CORT_0D01560 Candida orthopsilosis CORT_0D01560 I
CTRG_03632 Candida tropicalis CTRG_03632 I
DEHA2D05500g Debaryomyces hansenii DEHA2D05500g I
Ecym_6116 Eremothecium cymbalariae Ecym_6116 I
G210_3644 Candida maltosa G210_3644 I
GNLVRS01_PISO0A06138g Millerozyma farinosa GNLVRS01_PISO0A06138g I
GNLVRS01_PISO0B06205g Millerozyma farinosa GNLVRS01_PISO0B06205g I
HPODL_01037 Ogataea parapolymorpha HPODL_01037 I
JL09_g2035 Pichia kudriavzevii JL09_g2035 I
JL09_g5487 Pichia kudriavzevii JL09_g5487 I
KAFR_0B01950 Kazachstania africana KAFR_0B01950 I
KLLA0_A03047g Kluyveromyces lactis KLLA0_A03047g I
KLTH0G16984g Lachancea thermotolerans KLTH0G16984g I
Kpol_541p30 Vanderwaltozyma polyspora Kpol_541p30 I
TPHA_0H00580 Tetrapisispora phaffii TPHA_0H00580 N