HDID_0000576901 (Hymenolepis diminuta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 HDID_0000576901 T259580_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HDID_0000576901-mRNA-1 MADS box 63 110

Links

Other MADS box family TFs
Other Hymenolepis diminuta TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PISMIDRAFT_518962 Pisolithus microcarpus PISMIDRAFT_518962 N 0.000
M408DRAFT_112963 Serendipita vermifera M408DRAFT_112963 N 0.000
M408DRAFT_331100 Serendipita vermifera M408DRAFT_331100 N 0.000
M413DRAFT_317271 Hebeloma cylindrosporum M413DRAFT_317271 N 0.000
Moror_3334 Moniliophthora roreri Moror_3334 N 0.000
PAXRUDRAFT_310605 Paxillus rubicundulus PAXRUDRAFT_310605 N 0.000
PHACADRAFT_250026 Phanerochaete carnosa PHACADRAFT_250026 N 0.000
PIIN_04557 Piriformospora indica PIIN_04557 N 0.000
PILCRDRAFT_98744 Piloderma croceum PILCRDRAFT_98744 N 0.000
M407DRAFT_227259 Tulasnella calospora M407DRAFT_227259 N 0.000
PLEOSDRAFT_1112373 Pleurotus ostreatus PLEOSDRAFT_1112373 N 0.000
SCHCODRAFT_255004 Schizophyllum commune SCHCODRAFT_255004 N 0.000
SCLCIDRAFT_1214056 Scleroderma citrinum SCLCIDRAFT_1214056 N 0.000
SERLA73DRAFT_164436 Serpula lacrymans SERLA73DRAFT_164436 N 0.000
V565_005940 Rhizoctonia solani V565_005940 N 0.000
fgenesh1_pg.C_scaffold_2000219 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_2000219 N 0.000
estExt_fgenesh2_pg.C_40332 Heterobasidion annosum estExt_fgenesh2_pg.C_40332 N 0.000
fgeneshTM_pg.3_#_605 Tremella mesenterica fgeneshTM_pg.3_#_605 N 0.000
GLOTRDRAFT_135965 Gloeophyllum trabeum GLOTRDRAFT_135965 N 0.000
BN946_scf185015.g136 Trametes cinnabarina BN946_scf185015.g136 N 0.000
BOTBODRAFT_26540 Botryobasidium botryosum BOTBODRAFT_26540 N 0.000
CC1G_01461 Coprinopsis cinerea CC1G_01461 N 0.000
CERSUDRAFT_80180 Ceriporiopsis subvermispora CERSUDRAFT_80180 N 0.000
CY34DRAFT_22781 Suillus luteus CY34DRAFT_22781 N 0.000
DICSQDRAFT_58350 Dichomitus squalens DICSQDRAFT_58350 N 0.000
FOMPIDRAFT_1125748 Fomitopsis pinicola FOMPIDRAFT_1125748 N 0.000
GALMADRAFT_133470 Galerina marginata GALMADRAFT_133470 N 0.000
AGABI2DRAFT_195724 Agaricus bisporus AGABI2DRAFT_195724 N 0.000
GYMLUDRAFT_179245 Gymnopus luxurians GYMLUDRAFT_179245 N 0.000
HETIRDRAFT_449677 Heterobasidion irregulare HETIRDRAFT_449677 N 0.000
JAAARDRAFT_52170 Jaapia argillacea JAAARDRAFT_52170 N 0.000
K443DRAFT_131560 Laccaria amethystina K443DRAFT_131560 N 0.000
LACBIDRAFT_292733 Laccaria bicolor LACBIDRAFT_292733 N 0.000
M378DRAFT_175598 Amanita muscaria M378DRAFT_175598 N 0.000
M404DRAFT_678760 Pisolithus tinctorius M404DRAFT_678760 N 0.000