MCOS_0000609801 (Mesocestoides corti)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MCOS_0000609801 T259603_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MCOS_0000609801-mRNA-1 MADS box 69 116

Links

Other MADS box family TFs
Other Mesocestoides corti TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PV11_02684 Exophiala sideris PV11_02684 N 0.000
MGYG_03712 Microsporum gypseum MGYG_03712 N 0.000
PCH_Pc21g17490 Penicillium rubens PCH_Pc21g17490 N 0.000
PDE_09355 Penicillium oxalicum PDE_09355 N 0.000
PMAA_036960 Talaromyces marneffei PMAA_036960 N 0.000
PV04_03557 Capronia semiimmersa PV04_03557 N 0.000
PV04_03941 Capronia semiimmersa PV04_03941 N 0.000
PV05_05879 Exophiala xenobiotica PV05_05879 N 0.000
PV05_07172 Exophiala xenobiotica PV05_07172 N 0.000
PV06_00153 Exophiala oligosperma PV06_00153 N 0.000
PV07_04661 Cladophialophora immunda PV07_04661 N 0.000
PV07_06727 Cladophialophora immunda PV07_06727 N 0.000
PV08_09743 Exophiala spinifera PV08_09743 N 0.000
PV11_00858 Exophiala sideris PV11_00858 N 0.000
MCYG_06896 Arthroderma otae MCYG_06896 N 0.000
PVAR5_7243 Byssochlamys spectabilis PVAR5_7243 N 0.000
TSTA_055160 Talaromyces stipitatus TSTA_055160 N 0.000
Z517_05815 Fonsecaea pedrosoi Z517_05815 N 0.000
Z517_10400 Fonsecaea pedrosoi Z517_10400 N 0.000
Z518_01292 Rhinocladiella mackenziei Z518_01292 N 0.000
Z518_11251 Rhinocladiella mackenziei Z518_11251 N 0.000
Z519_02290 Cladophialophora bantiana Z519_02290 N 0.000
Z519_06883 Cladophialophora bantiana Z519_06883 N 0.000
estExt_Genewise1Plus.C_150467 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_150467 N 0.000
fgenesh1_pm.00162_#_137 Aspergillus carbonarius fgenesh1_pm.00162_#_137 N 0.000
Pc21g17490 Penicillium chrysogenum Pc21g17490 N 0.000
PMAA_036960 Penicillium marneffei PMAA_036960 N 0.000
NFIA_036720 Neosartorya fischeri CADNFIAG00003562 N 0.000
MCYG_06896 Microsporum canis MCYG_06896 N 0.000
A1O1_08721 Capronia coronata A1O1_08721 N 0.000
A1O3_08106 Capronia epimyces A1O3_08106 N 0.000
A1O5_04458 Cladophialophora psammophila A1O5_04458 N 0.000
A1O5_11083 Cladophialophora psammophila A1O5_11083 N 0.000
A1O7_03367 Cladophialophora yegresii A1O7_03367 N 0.000
A1O9_03441 Exophiala aquamarina A1O9_03441 N 0.000
A1O9_12648 Exophiala aquamarina A1O9_12648 N 0.000
BDDG_09052 Blastomyces dermatitidis BDDG_09052 N 0.000
AFUA_5G06410 Aspergillus fumigatus CADAFUAG00006238 N 0.000
CADANGAG00013526 Aspergillus niger CADANGAG00013526 N 0.000
ANIA_02270 Aspergillus nidulans CADANIAG00008962 N 0.000
ATEG_09390 Aspergillus terreus CADATEAG00008360 N 0.000
CIMG_06012 Coccidioides immitis CIMG_06012 N 0.000
CPC735_025940 Coccidioides posadasii CPC735_025940 N 0.000
EPUS_04193 Endocarpon pusillum EPUS_04193 N 0.000
EURHEDRAFT_414224 Aspergillus ruber EURHEDRAFT_414224 N 0.000
G647_03415 Cladophialophora carrionii G647_03415 N 0.000
G647_05017 Cladophialophora carrionii G647_05017 N 0.000
H101_07203 Trichophyton interdigitale H101_07203 N 0.000
H102_04274 Trichophyton rubrum H102_04274 N 0.000
H105_04299 Trichophyton soudanense H105_04299 N 0.000
HMPREF1120_04992 Exophiala dermatitidis HMPREF1120_04992 N 0.000
HMPREF1120_09222 Exophiala dermatitidis HMPREF1120_09222 N 0.000
HMPREF1541_04963 Cyphellophora europaea HMPREF1541_04963 N 0.000
HMPREF1541_06758 Cyphellophora europaea HMPREF1541_06758 N 0.000