SROB_0002013401 (Schistosoma rodhaini)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 SROB_0002013401 T259649_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SROB_0002013401-mRNA-1 MADS box 121 168

Links

Other MADS box family TFs
Other Schistosoma rodhaini TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Clk Drosophila melanogaster FBgn0023076 D
HMEL008784 Heliconius melpomene HMEL008784 I
PPAI002844 Phlebotomus papatasi PPAI002844 I
LLOJ006614 Lutzomyia longipalpis LLOJ006614 I
LCUP014936 Lucilia cuprina LCUP014936 I
HHAL003628-PA Halyomorpha halys HHAL003628-PA I
Hsal_05831--XP_394233.3_APIME Harpegnathos saltator Hsal_05831--XP_394233.3_APIME I
Cflo_02744--XP_394233.3_APIME Camponotus floridanus Cflo_02744--XP_394233.3_APIME I
YQE_03736 Dendroctonus ponderosae YQE_03736 I
TC000088 Tribolium castaneum TC000088 I
RPRC002110 Rhodnius prolixus RPRC002110 I
PHUM426300 Pediculus humanus PHUM426300 I
NV19013 Nasonia vitripennis NV19013 I
MCINX000525 Melitaea cinxia MCINX000525 I
KGM_10878 Danaus plexippus KGM_10878 I
ISCW007040 Ixodes scapularis ISCW007040 I
ACEP20954 Atta cephalotes ACEP20954 I
GB48028 Apis mellifera GB48028 I
GE20390 Drosophila yakuba FBgn0237706 I
GK10694 Drosophila willistoni FBgn0212707 I
GJ11427 Drosophila virilis FBgn0198685 I
GD13034 Drosophila simulans FBgn0184756 I
GM24989 Drosophila sechellia FBgn0179850 I
GL17825 Drosophila persimilis FBgn0155428 I
GI12195 Drosophila mojavensis FBgn0134952 I
GH16514 Drosophila grimshawi FBgn0123985 I
GG14938 Drosophila erecta FBgn0107192 I
GF24152 Drosophila ananassae FBgn0101146 I
GA20318 Drosophila pseudoobscura FBgn0080313 I
DAPPUDRAFT_346996 Daphnia pulex DAPPUDRAFT_346996 I