TTAC_0000870401 (Hydatigera taeniaeformis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 TTAC_0000870401 T259676_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TTAC_0000870401-mRNA-1 MADS box 61 108

Links

Other MADS box family TFs
Other Hydatigera taeniaeformis TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FGRRES_04109 Fusarium graminearum FGRRES_04109 D
NCU00445 Neurospora crassa NCU00445 D
CIMG_09377 Coccidioides immitis CIMG_09377 I
CIMG_09809 Coccidioides immitis CIMG_09809 I
MCYG_03949 Microsporum canis MCYG_03949 I
VDBG_07828 Verticillium albo atrum VDBG_07828 I
ACRE_052720 Acremonium chrysogenum ACRE_052720 I
AOL_s00215g441 Arthrobotrys oligospora AOL_s00215g441 I
ARB_03330 Arthroderma benhamiae ARB_03330 I
AUEXF2481DRAFT_2214 Aureobasidium subglaciale AUEXF2481DRAFT_2214 I
BAUCODRAFT_31811 Baudoinia compniacensis BAUCODRAFT_31811 I
BBA_03744 Beauveria bassiana BBA_03744 I
Bcin08g04710 Botrytis cinerea Bcin08g04710 I
BDDG_03909 Blastomyces dermatitidis BDDG_03909 I
BDDG_07330 Blastomyces dermatitidis BDDG_07330 I
BGHDH14_bgh04346 Blumeria graminis BGHDH14_bgh04346 I
ACLA_016290 Aspergillus clavatus CADACLAG00001582 I
CADAFLAG00009131 Aspergillus flavus CADAFLAG00009131 I
AFUA_5G13310 Aspergillus fumigatus CADAFUAG00006042 I
CADANGAG00011408 Aspergillus niger CADANGAG00011408 I
ANIA_06889 Aspergillus nidulans CADANIAG00007690 I
CADAORAG00011593 Aspergillus oryzae CADAORAG00011593 I
ATEG_06183 Aspergillus terreus CADATEAG00001886 I
NFIA_073730 Neosartorya fischeri CADNFIAG00007209 I
CCM_09455 Cordyceps militaris CCM_09455 I
CFIO01_07206 Colletotrichum fioriniae CFIO01_07206 I
CGGC5_9480 Colletotrichum gloeosporioides CGGC5_9480 I
CH063_11861 Colletotrichum higginsianum CH063_11861 I
CH063_15177 Colletotrichum higginsianum CH063_15177 I
CHGG_03119 Chaetomium globosum CHGG_03119 I
CMQ_3221 Grosmannia clavigera CMQ_3221 I
Cob_05363 Colletotrichum orbiculare Cob_05363 I
COCC4DRAFT_172749 Bipolaris maydis COCC4DRAFT_172749 I
COCCADRAFT_109263 Bipolaris zeicola COCCADRAFT_109263 I
COCMIDRAFT_27930 Bipolaris oryzae COCMIDRAFT_27930 I
COCSADRAFT_141952 Bipolaris sorokiniana COCSADRAFT_141952 I
COCVIDRAFT_100340 Bipolaris victoriae COCVIDRAFT_100340 I
CPC735_017550 Coccidioides posadasii CPC735_017550 I
CPC735_022740 Coccidioides posadasii CPC735_022740 I
CPUR_00998 Claviceps purpurea CPUR_00998 I
CSUB01_08637 Colletotrichum sublineola CSUB01_08637 I
CTHT_0026520 Chaetomium thermophilum CTHT_0026520 I
DOTSEDRAFT_41728 Dothistroma septosporum DOTSEDRAFT_41728 I
EPUS_05568 Endocarpon pusillum EPUS_05568 I
EV44_g2662 Erysiphe necator EV44_g2662 I
F503_04589 Ophiostoma piceae uamh F503_04589 I
FFUJ_09555 Fusarium fujikuroi FFUJ_09555 I
FOXG_11527 Fusarium oxysporum FOXG_11527 I
FPSE_00129 Fusarium pseudograminearum FPSE_00129 I
FVEG_10296 Fusarium verticillioides FVEG_10296 I
GGTG_01006 Gaeumannomyces graminis GGTG_01006 I
GLRG_00439 Colletotrichum graminicola GLRG_00439 I
GMDG_01671 Pseudogymnoascus destructans GMDG_01671 I
GSTUM_00004569001 Tuber melanosporum GSTUM_00004569001 I
H072_3292 Dactylellina haptotyla H072_3292 I
H101_07533 Trichophyton interdigitale H101_07533 I
HCBG_01563 Histoplasma capsulatum HCBG_01563 I
HCBG_06235 Histoplasma capsulatum HCBG_06235 I
HMPREF1624_04820 Sporothrix schenckii HMPREF1624_04820 I
LEMA_P107540.1 Leptosphaeria maculans LEMA_P107540.1 I
M437DRAFT_57951 Aureobasidium melanogenum M437DRAFT_57951 I
M438DRAFT_333229 Aureobasidium pullulans M438DRAFT_333229 I
MAC_01643 Metarhizium acridum MAC_01643 I
MAJ_02389 Metarhizium majus MAJ_02389 I
MAM_00184 Metarhizium album MAM_00184 I
MANI_117820 Metarhizium anisopliae MANI_117820 I
MBM_01117 Marssonina brunnea MBM_01117 I
MBR_02809 Metarhizium brunneum MBR_02809 I
MGG_15139 Magnaporthe oryzae MGG_15139 I
MGU_00202 Metarhizium guizhouense MGU_00202 I
MGYG_07702 Microsporum gypseum MGYG_07702 I
MYCFIDRAFT_52991 Pseudocercospora fijiensis MYCFIDRAFT_52991 I
Mycgr3G111074 Zymoseptoria tritici Mycgr3G111074 I
NechaG100921 Fusarium solani NechaG100921 I
NEUTE1DRAFT_146594 Neurospora tetrasperma NEUTE1DRAFT_146594 I
OIDMADRAFT_157493 Oidiodendron maius OIDMADRAFT_157493 I
PAAG_05555 Paracoccidioides sp lutzii PAAG_05555 I
PABG_07603 Paracoccidioides brasiliensis PABG_07603 I
PCH_Pc21g03530 Penicillium rubens PCH_Pc21g03530 I
PDE_07343 Penicillium oxalicum PDE_07343 I
PFICI_12447 Pestalotiopsis fici PFICI_12447 I
PMAA_034090 Talaromyces marneffei PMAA_034090 I
PODANS_7_6620 Podospora anserina PODANS_7_6620 I
PTRG_05544 Pyrenophora triticirepentis PTRG_05544 I
PTT_20177 Pyrenophora teres PTT_20177 I
PVAR5_1796 Byssochlamys spectabilis PVAR5_1796 I
S40285_07798 Stachybotrys chlorohalonata S40285_07798 I
S40288_04720 Stachybotrys chartarum S40288_04720 I
SAPIO_CDS2099 Scedosporium apiospermum SAPIO_CDS2099 I
SBOR_3221 Sclerotinia borealis SBOR_3221 I
SEPMUDRAFT_147002 Sphaerulina musiva SEPMUDRAFT_147002 I
SMAC_01881 Sordaria macrospora SMAC_01881 I
SPBR_05123 Sporothrix brasiliensis SPBR_05123 I
TEQG_03363 Trichophyton equinum TEQG_03363 I
TESG_04869 Trichophyton tonsurans TESG_04869 I
THITE_2118415 Thielavia terrestris THITE_2118415 I
TRIATDRAFT_291718 Trichoderma atroviride TRIATDRAFT_291718 I
TRIREDRAFT_59067 Trichoderma reesei TRIREDRAFT_59067 I
TRIVIDRAFT_10694 Trichoderma virens TRIVIDRAFT_10694 I
TSTA_063500 Talaromyces stipitatus TSTA_063500 I
U727_0043014751 Penicillium solitum U727_0043014751 I
UCRNP2_8934 Neofusicoccum parvum UCRNP2_8934 I
UREG_04936 Uncinocarpus reesii UREG_04936 I
UV8b_2527 Ustilaginoidea virens UV8b_2527 I
V499_02322 Pseudogymnoascus pannorum V499_02322 I
VDAG_09694 Verticillium dahliae VDAG_09694 I
VDBG_07828 Verticillium alfalfae VDBG_07828 I
VHEMI07768 Torrubiella hemipterigena VHEMI07768 I
W97_09318 Coniosporium apollinis W97_09318 I
X797_000863 Metarhizium robertsii X797_000863 I
estExt_fgenesh1_pg.C_180221 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_180221 I
estExt_fgenesh1_pg.C_chr_100274 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_100274 I
estExt_fgenesh1_pg.C_sca_20_chr6_4_00369 Nectria haematococca estExt_fgenesh1_pg.C_sca_20_chr6_4_00369 I
estExt_fgenesh2_pg.C_50201 Neurospora discreta estExt_fgenesh2_pg.C_50201 I
estExt_Genewise1.C_160684 Mycosphaerella fijiensis estExt_Genewise1.C_160684 I
estExt_Genewise1Plus.C_12014 Cryphonectria parasitica estExt_Genewise1Plus.C_12014 I
fgenesh1_pm.00710_#_124 Aspergillus carbonarius fgenesh1_pm.00710_#_124 I
Pc21g03530 Penicillium chrysogenum Pc21g03530 I
PMAA_034090 Penicillium marneffei PMAA_034090 I