CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSSSCG00000012796 *(Sus scrofa)* MBD
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF01429 (MBD)	IPR001739	ENSSSCG00000012796	T260431_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Mecp2 M00806_2.00	Mus musculus	NNNNNHAHNN	NNDTDNNNNN	PBM Weirauch et al.(2013) pTH3054	0.836	0.836
MECP2 M09257_2.00	Homo sapiens	SCCGGRR	YYCCGGS	Misc Kulakovskiy et al.(2013) MECP2_HUMAN.H11MO.0.C	0.836	0.836
Mecp2 M09259_2.00	Mus musculus	SCCGGRR	YYCCGGS	Misc Kulakovskiy et al.(2013) MECP2_MOUSE.H11MO.0.C	0.836	0.836
MECP2 M11032_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MECP2_01	0.836	0.836
MECP2 M11033_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MECP2_02	0.836	0.836
MECP2 M11034_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MECP2_Q4_01	0.836	0.836
MECP2 M11035_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MECP2_Q4	0.836	0.836
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSSSCP00000013606	MBD	21	97	RGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKLQELAEVGDAPKGVAPRDPRQQR
ENSSSCP00000028935	MBD	91	162	RGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGR

Links
Other MBD family TFs
Other *Sus scrofa* TFs