TRFL4 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Al_scaffold_0005_2280 T266111_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.883 0.915
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.823 0.894
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.823 0.894
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.823 0.894
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.823 0.894
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0005_2280 Myb 314 364

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
XP_001368961.2 Monodelphis domestica XP_001368961.2 D 0.000
TET1 Homo sapiens ENSG00000138336 D 0.000
TET1 Oryctolagus cuniculus ENSOCUG00000013277 I 0.000
ENSOANG00000015049 Ornithorhynchus anatinus ENSOANG00000015049 I 0.000
TET1 Otolemur garnettii ENSOGAG00000034454 I 0.000
ENSOPRG00000005862 Ochotona princeps ENSOPRG00000005862 I 0.000
ENSPANG00000022122 Papio anubis ENSPANG00000022122 I 0.000
TET1 Procavia capensis ENSPCAG00000007795 I 0.000
ENSPPYG00000002393 Pongo abelii ENSPPYG00000002393 I 0.000
TET1 Pan troglodytes ENSPTRG00000002558 I 0.000
TET1 Pteropus vampyrus ENSPVAG00000003593 I 0.000
Tet1 Rattus norvegicus ENSRNOG00000000277 I 0.000
TET1 Sorex araneus ENSSARG00000011693 I 0.000
ENSSTOG00000001527 Ictidomys tridecemlineatus ENSSTOG00000001527 I 0.000
ENSTSYG00000006963 Tarsius syrichta ENSTSYG00000006963 I 0.000
TET1 Tursiops truncatus ENSTTRG00000001566 I 0.000
TET1 Vicugna pacos ENSVPAG00000011820 I 0.000
ENSP00000362748-D1 Bos grunniens ENSP00000362748-D1 I 0.000
Myotis_brandtii_TET1_10018894 Myotis brandtii Myotis_brandtii_TET1_10018894 I 0.000
TET1 Gorilla gorilla ENSGGOG00000011822 I 0.000
TET1 Bos taurus ENSBTAG00000037756 I 0.000
TET1 Canis familiaris ENSCAFG00000013739 I 0.000
TET1 Callithrix jacchus ENSCJAG00000019005 I 0.000
TET1 Cavia porcellus ENSCPOG00000009306 I 0.000
ENSCSAG00000007633 Chlorocebus sabaeus ENSCSAG00000007633 I 0.000
TET1 Dasypus novemcinctus ENSDNOG00000018763 I 0.000
ENSECAG00000015450 Equus caballus ENSECAG00000015450 I 0.000
TET1 Felis catus ENSFCAG00000012673 I 0.000
ENSOARG00000005141 Ovis aries ENSOARG00000005141 I 0.000
TET1 Loxodonta africana ENSLAFG00000006171 I 0.000
ENSMEUG00000007667 Macropus eugenii ENSMEUG00000007667 I 0.000
TET1 Macaca mulatta ENSMMUG00000023198 I 0.000
TET1 Monodelphis domestica ENSMODG00000017310 I 0.000
ENSMPUG00000012204 Mustela putorius furo ENSMPUG00000012204 I 0.000
Tet1 Mus musculus ENSMUSG00000047146 I 0.000
ENSNLEG00000011782 Nomascus leucogenys ENSNLEG00000011782 I 0.000
ENSAMEG00000018009 Ailuropoda melanoleuca ENSAMEG00000018009 I 0.000