AMTR_s00001p00261430 (Amborella trichopoda)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AMTR_s00001p00261430 T266130_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.909 0.978
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.901 0.957
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.901 0.957
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.901 0.957
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.901 0.957
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.899 0.957
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.899 0.957
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.899 0.957
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.803 0.913
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.803 0.913
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.803 0.913
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM96503 Myb 30 75

Links

Other Myb/SANT family TFs
Other Amborella trichopoda TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORUFI08G24840 Oryza rufipogon ORUFI08G24840 I 0.000
Pavir.J40111 Panicum virgatum Pavir.J40111 I 0.000
Pavir.J01049 Panicum virgatum Pavir.J01049 I 0.000
Pavir.Ba01307 Panicum virgatum Pavir.Ba01307 I 0.000
Pavir.Ba01305 Panicum virgatum Pavir.Ba01305 I 0.000
Si032741m.g Setaria italica Si032741m.g I 0.000
Si031900m.g Setaria italica Si031900m.g I 0.000
Si015513m.g Setaria italica Si015513m.g I 0.000
Sb07g025310 Sorghum bicolor Sb07g025310 I 0.000
Sb02g030120 Sorghum bicolor Sb02g030120 I 0.000
Sb02g030110 Sorghum bicolor Sb02g030110 I 0.000
OS09G0519100 Oryza sativa OS09G0519100 I 0.000
OS08G0543700 Oryza sativa OS08G0543700 I 0.000
ORUFI09G17940 Oryza rufipogon ORUFI09G17940 I 0.000
BGIOSGA026551 Oryza indica BGIOSGA026551 I 0.000
ORGLA09G0131400 Oryza glaberrima ORGLA09G0131400 I 0.000
ORGLA08G0221300 Oryza glaberrima ORGLA08G0221300 I 0.000
ONIVA09G17720 Oryza nivara ONIVA09G17720 I 0.000
ONIVA08G25370 Oryza nivara ONIVA08G25370 I 0.000
OMERI08G17270 Oryza meridionalis OMERI08G17270 I 0.000
OGLUM09G17250 Oryza glumaepatula OGLUM09G17250 I 0.000
OGLUM08G23650 Oryza glumaepatula OGLUM08G23650 I 0.000
LPERR09G12780 Leersia perrieri LPERR09G12780 I 0.000
LPERR03G22350 Leersia perrieri LPERR03G22350 I 0.000
GRMZM2G107560 Zea mays GRMZM2G107560 I 0.000
GRMZM2G038479 Zea mays GRMZM2G038479 I 0.000
GRMZM2G013688 Zea mays GRMZM2G013688 I 0.000
BGIOSGA029426 Oryza indica BGIOSGA029426 I 0.000
Pavir.Fa00073 Panicum virgatum Pavir.Fa00073 N 0.000