AtMYB53 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G65230 T266583_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.825 0.839
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.825 0.839
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.803 0.860
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.803 0.860
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.782 0.817
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.782 0.817
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.755 0.742
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.716 0.710
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.692 0.699
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.692 0.699
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.692 0.699
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.685 0.753
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.683 0.720
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.683 0.720
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.682 0.774
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.682 0.774
AtMYB41
M07109_2.00 		Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH		 Dap-seq
OMalley et al.(2016)
MYB41_col_a 		0.671 0.742
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.664 0.742
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.664 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G65230.1 Myb 14 61
AT5G65230.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

925 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30167.m000852 Ricinus communis 30167.m000852 N
Ciclev10011915m.g Citrus clementina Ciclev10011915m.g N
Carubv10023471m.g Capsella rubella Carubv10023471m.g N
Cagra.18121s0004 Capsella grandiflora Cagra.18121s0004 N
Bostr.23794s0314 Boechera stricta Bostr.23794s0314 N
Aquca_027_00369 Aquilegia coerulea Aquca_027_00369 N
mgf026496m Mimulus guttatus mgf026496m N
mgf026281m Mimulus guttatus mgf026281m N
Cucsa.031620 Cucumis sativus Cucsa.031620 N
cassava35798.valid.m1 Manihot esculenta cassava35798.valid.m1 N
Ciclev10012089m.g Citrus clementina Ciclev10012089m.g N
29767.m000199 Ricinus communis 29767.m000199 N
28603.m000172 Ricinus communis 28603.m000172 N
Pm002699 Prunus mume Pm002699 N
Cla007228 Citrullus lanatus Cla007228 N
Ca_21130 Cicer arietinum Ca_21130 N
VIT_14s0083g00120 Vitis vinifera VIT_14s0083g00120 N
VIT_08s0007g00410 Vitis vinifera VIT_08s0007g00410 N
TRIUR3_13997 Triticum urartu TRIUR3_13997 N
Traes_5DS_8F3BD4450 Triticum aestivum Traes_5DS_8F3BD4450 N
MDP0000282792 Malus domestica MDP0000282792 N
chr3.LjT11G09.160.nc Lotus japonicus chr3.LjT11G09.160.nc N
chr3.LjT11G09.150.nc Lotus japonicus chr3.LjT11G09.150.nc N
PK14097.1 Cannabis sativa PK14097.1 N
Thhalv10016830m.g Eutrema salsugineum Thhalv10016830m.g N
SapurV1A.0101s0440 Salix purpurea SapurV1A.0101s0440 N
SapurV1A.0001s1780 Salix purpurea SapurV1A.0001s1780 N
Pavir.Cb00486 Panicum virgatum Pavir.Cb00486 N
orange1.1g018768m.g Citrus sinensis orange1.1g018768m.g N
MDP0000708334 Malus domestica MDP0000708334 N
Traes_5BS_E635B0A281 Triticum aestivum Traes_5BS_E635B0A281 N
MDP0000252887 Malus domestica MDP0000252887 N
Lus10025355.g Linum usitatissimum Lus10025355.g N
Lus10024392.g Linum usitatissimum Lus10024392.g N
Gorai.012G104100 Gossypium raimondii Gorai.012G104100 N
gene18421-v1.0-hybrid Fragaria vesca gene18421-v1.0-hybrid N
gene10329-v1.0-hybrid Fragaria vesca gene10329-v1.0-hybrid N
gene08535-v1.0-hybrid Fragaria vesca gene08535-v1.0-hybrid N
evm.TU.supercontig_333.1 Carica papaya evm.TU.supercontig_333.1 N
Eucgr.K03130 Eucalyptus grandis Eucgr.K03130 N
GLYMA03G19030 Glycine max GLYMA03G19030 N
MTR_7g061550 Medicago truncatula MTR_7g061550 N
LPERR12G13690 Leersia perrieri LPERR12G13690 N
GSMUA_Achr9G03320_001 Musa acuminata GSMUA_Achr9G03320_001 N
GSMUA_Achr7G10550_001 Musa acuminata GSMUA_Achr7G10550_001 N
GSMUA_Achr5G29070_001 Musa acuminata GSMUA_Achr5G29070_001 N
GRMZM2G403620 Zea mays GRMZM2G403620 N
GLYMA18G39771 Glycine max GLYMA18G39771 N
GLYMA18G26600 Glycine max GLYMA18G26600 N
GLYMA07G15850 Glycine max GLYMA07G15850 N
OB12G23330 Oryza brachyantha OB12G23330 N
fgenesh1_pm.C_scaffold_4001520 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001520 N
BRADI4G03970 Brachypodium distachyon BRADI4G03970 N
Bra005177 Brassica rapa Bra005177 N
Bra000011 Brassica rapa Bra000011 N
Bo4g030340 Brassica oleracea Bo4g030340 N
Bo3g031880 Brassica oleracea Bo3g031880 N
BGIOSGA037216 Oryza indica BGIOSGA037216 N
BGIOSGA035973 Oryza indica BGIOSGA035973 N
AS1 Arabidopsis thaliana AT2G37630 N
PGSC0003DMG400008834 Solanum tuberosum PGSC0003DMG400008834 N
TCM_021932 Theobroma cacao TCM_021932 N
TCM_019507 Theobroma cacao TCM_019507 N
Solyc09g010840.1 Solanum lycopersicum Solyc09g010840.1 N
scaffold_402408.1 Arabidopsis lyrata scaffold_402408.1 N
Sb08g018840 Sorghum bicolor Sb08g018840 N
PRUPE_ppa007753mg Prunus persica PRUPE_ppa007753mg N
POPTR_0017s13950 Populus trichocarpa POPTR_0017s13950 N
POPTR_0006s08610 Populus trichocarpa POPTR_0006s08610 N
POPTR_0004s10250 Populus trichocarpa POPTR_0004s10250 N
AMTR_s00044p00233260 Amborella trichopoda AMTR_s00044p00233260 N
OS12G0572000 Oryza sativa OS12G0572000 N
ORUFI12G18280 Oryza rufipogon ORUFI12G18280 N
ORGLA12G0144700 Oryza glaberrima ORGLA12G0144700 N
OPUNC12G14950 Oryza punctata OPUNC12G14950 N
ONIVA02G22170 Oryza nivara ONIVA02G22170 N
OMERI08G15890 Oryza meridionalis OMERI08G15890 N
OGLUM12G18010 Oryza glumaepatula OGLUM12G18010 N
OBART12G16450 Oryza barthii OBART12G16450 N