Bo3g002070 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo3g002070 T267199_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.909 0.978
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.909 0.978
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.909 0.957
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.909 0.957
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.909 0.957
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.901 0.935
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.891 0.913
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.891 0.913
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.891 0.913
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.848
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.795 0.848
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.795 0.848
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.795 0.848
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.674
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.630
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.630
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.630
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g002070.1 Myb 45 90

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
br Drosophila melanogaster FBgn0000210 D
AMEC016444 Anopheles melas AMEC016444 N
LDEC009788 Leptinotarsa decemlineata LDEC009788 N
AARA006779 Anopheles arabiensis AARA006779 N
ACOM042123 Anopheles coluzzii ACOM042123 N
ADIR009008 Anopheles dirus ADIR009008 N
AEPI002763 Anopheles epiroticus AEPI002763 N
AFAF016384 Anopheles farauti AFAF016384 N
AFUN005064 Anopheles funestus AFUN005064 N
AMAM014509 Anopheles maculatus AMAM014509 N
LCUP011136 Lucilia cuprina LCUP011136 N
AMEM001056 Anopheles merus AMEM001056 N
AMIN003105 Anopheles minimus AMIN003105 N
AQUA008618 Anopheles quadriannulatus AQUA008618 N
LLOJ000809 Lutzomyia longipalpis LLOJ000809 N
MDOA002234 Musca domestica MDOA002234 N
PPAI010690 Phlebotomus papatasi PPAI010690 N
ACEP24929 Atta cephalotes ACEP24929 N
Hsal_01159--NP_001035356.1_APIME Harpegnathos saltator Hsal_01159--NP_001035356.1_APIME N
Cflo_02156--NP_001035356.1_APIME Camponotus floridanus Cflo_02156--NP_001035356.1_APIME N
TC005476 Tribolium castaneum TC005476 N
SINV21863 Solenopsis invicta SINV21863 N
NV15003 Nasonia vitripennis NV15003 N
KGM_00053 Danaus plexippus KGM_00053 N
HMEL012334 Heliconius melpomene HMEL012334 N
GB48273 Apis mellifera GB48273 N
GE16700 Drosophila yakuba FBgn0234197 N
GI16494 Drosophila mojavensis FBgn0139242 N
CPIJ003271 Culex quinquefasciatus CPIJ003271 N
BGIBMGA009909 Bombyx mori BGIBMGA009909 N
AGAP002163 Anopheles gambiae AGAP002163 N
ADAC009993 Anopheles darlingi ADAC009993 N