Bo3g012470 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo3g012470 T267217_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.861 0.891
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.861 0.891
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.861 0.891
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.779 0.783
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.770 0.804
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.761 0.761
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.761 0.761
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.731 0.761
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.731 0.761
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.724 0.652
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.724 0.652
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.724 0.652
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.716 0.739
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.716 0.739
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.716 0.739
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.716 0.739
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.716 0.739
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.683 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g012470.1 Myb 48 93

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

303 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pm.00009_#_398 Aspergillus carbonarius fgenesh1_pm.00009_#_398 I
CADANGAG00000740 Aspergillus niger CADANGAG00000740 I
DOTSEDRAFT_68803 Dothistroma septosporum DOTSEDRAFT_68803 N
AB07551.1 Alternaria brassicicola AB07551.1 N
estExt_Genewise1Plus.C_60333 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_60333 N
W97_06726 Coniosporium apollinis W97_06726 N
TSTA_076400 Talaromyces stipitatus TSTA_076400 N
SETTUDRAFT_165606 Setosphaeria turcica SETTUDRAFT_165606 N
PV09_02615 Verruconis gallopava PV09_02615 N
OIDMADRAFT_53477 Oidiodendron maius OIDMADRAFT_53477 N
M437DRAFT_32680 Aureobasidium melanogenum M437DRAFT_32680 N
LEMA_P055010.1 Leptosphaeria maculans LEMA_P055010.1 N
SNOG_07105 Stagonospora nodorum SNOG_07105 N
COCVIDRAFT_24280 Bipolaris victoriae COCVIDRAFT_24280 N
COCSADRAFT_39203 Bipolaris sorokiniana COCSADRAFT_39203 N
COCMIDRAFT_102217 Bipolaris oryzae COCMIDRAFT_102217 N
COCCADRAFT_8436 Bipolaris zeicola COCCADRAFT_8436 N
COCC4DRAFT_161072 Bipolaris maydis COCC4DRAFT_161072 N
BAUCODRAFT_144502 Baudoinia compniacensis BAUCODRAFT_144502 N
AUEXF2481DRAFT_43559 Aureobasidium subglaciale AUEXF2481DRAFT_43559 N
A1O3_09669 Capronia epimyces A1O3_09669 N