Bra001941 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra001941 T267706_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.757 0.796
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.727 0.720
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.727 0.720
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.708 0.688
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.708 0.688
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.703 0.720
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.669 0.753
MYB27
M07097_2.00 		Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD		 Dap-seq
OMalley et al.(2016)
MYB27_col_a 		0.666 0.656
MYB27
M07098_2.00 		Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN		 Dap-seq
OMalley et al.(2016)
MYB27_colamp_a 		0.666 0.656
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.666 0.699
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.664 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001941.1-P Myb 20 67
Bra001941.1-P Myb 73 118

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

589 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MCINX005366 Melitaea cinxia MCINX005366 N
AMEM008456 Anopheles merus AMEM008456 N
AFAF012002 Anopheles farauti AFAF012002 N
AEPI009380 Anopheles epiroticus AEPI009380 N
cers5.S Xenopus laevis XB-GENE-866438 N
cers3.L Xenopus laevis XB-GENE-6251639 N
AAL89720 Xenopus laevis AAL89720 N
estExt_gwp.C_860189 Branchiostoma floridae estExt_gwp.C_860189 N
e_gw.479.83.1 Branchiostoma floridae e_gw.479.83.1 N
Ogr04694 Ophisaurus gracilis Ogr04694 N
Hsal_14209--XP_001123059.1_APIME Harpegnathos saltator Hsal_14209--XP_001123059.1_APIME N
Cflo_01607--XP_001123059.1_APIME Camponotus floridanus Cflo_01607--XP_001123059.1_APIME N
Afo_R008528 Aptenodytes forsteri Afo_R008528 N
SINV24013 Solenopsis invicta SINV24013 N
SINV20227 Solenopsis invicta SINV20227 N
MCINX005367 Melitaea cinxia MCINX005367 N
AAEL009092 Aedes aegypti AAEL009092 N
LotgiG226091 Lottia gigantea LotgiG226091 N
L798_00373 Zootermopsis nevadensis L798_00373 N
KGM_15429 Danaus plexippus KGM_15429 N
HMEL006147 Heliconius melpomene HMEL006147 N
ENSXMAG00000010322 Xiphophorus maculatus ENSXMAG00000010322 N
ENSSHAG00000003870 Sarcophilus harrisii ENSSHAG00000003870 N
ENSSHAG00000001747 Sarcophilus harrisii ENSSHAG00000001747 N
ENSSHAG00000001540 Sarcophilus harrisii ENSSHAG00000001540 N
ENSONIG00000017329 Oreochromis niloticus ENSONIG00000017329 N
ENSMICG00000014767 Microcebus murinus ENSMICG00000014767 N
ENSLOCG00000004390 Lepisosteus oculatus ENSLOCG00000004390 N
ENSGACG00000002760 Gasterosteus aculeatus ENSGACG00000002760 N
DAPPUDRAFT_220106 Daphnia pulex DAPPUDRAFT_220106 N
AGAP001761 Anopheles gambiae AGAP001761 N