Bra004503 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra004503 T267745_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.903 0.957
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.903 0.957
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.870 0.891
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.842 0.870
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.842 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.751 0.739
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.751 0.739
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.751 0.739
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.751 0.739
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.751 0.739
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.738 0.783
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.738 0.783
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.738 0.783
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.736 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004503.1-P Myb 24 69

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

295 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OLIG3 Homo sapiens ENSG00000177468 D
OLIG2 Homo sapiens ENSG00000205927 D
Olig2 Mus musculus ENSMUSG00000039830 D
Olig3 Mus musculus ENSMUSG00000045591 D
CapteG41307 Capitella teleta CapteG41307 I
CapteG65387 Capitella teleta CapteG65387 I
CGI_10019998 Crassostrea gigas CGI_10019998 I
CGI_10023146 Crassostrea gigas CGI_10023146 I
ENSAMEG00000015013 Ailuropoda melanoleuca ENSAMEG00000015013 I
ENSAMEG00000019633 Ailuropoda melanoleuca ENSAMEG00000019633 I
ENSAMXG00000026066 Astyanax mexicanus ENSAMXG00000026066 I
ENSAMXG00000026284 Astyanax mexicanus ENSAMXG00000026284 I
ENSAPLG00000002295 Anas platyrhynchos ENSAPLG00000002295 I
OLIG3 Bos taurus ENSBTAG00000008749 I
OLIG3 Canis familiaris ENSCAFG00000000265 I
OLIG2 Canis familiaris ENSCAFG00000028529 I
OLIG3 Choloepus hoffmanni ENSCHOG00000005165 I
OLIG2 Callithrix jacchus ENSCJAG00000009439 I
OLIG3 Cavia porcellus ENSCPOG00000007516 I
OLIG2 Cavia porcellus ENSCPOG00000011590 I
ENSCSAG00000000185 Chlorocebus sabaeus ENSCSAG00000000185 I
ENSCSAG00000018687 Chlorocebus sabaeus ENSCSAG00000018687 I
olig2 Danio rerio ENSDARG00000040946 I
OLIG3 Dasypus novemcinctus ENSDNOG00000042405 I
OLIG2 Dasypus novemcinctus ENSDNOG00000047420 I
ENSDORG00000006743 Dipodomys ordii ENSDORG00000006743 I
Olig3 Dipodomys ordii ENSDORG00000013033 I
OLIG3 Echinops telfairi ENSETEG00000004562 I
ENSFALG00000012862 Ficedula albicollis ENSFALG00000012862 I
OLIG3 Felis catus ENSFCAG00000030246 I
olig2 Gasterosteus aculeatus ENSGACG00000002152 I
OLIG3 Gasterosteus aculeatus ENSGACG00000010412 I
OLIG3 Gallus gallus ENSGALG00000013862 I
ENSGALG00000027381 Gallus gallus ENSGALG00000027381 I
OLIG3 Gorilla gorilla ENSGGOG00000001516 I
OLIG2 Gorilla gorilla ENSGGOG00000008780 I
ENSGMOG00000018006 Gadus morhua ENSGMOG00000018006 I
ENSGMOG00000018584 Gadus morhua ENSGMOG00000018584 I
ENSLACG00000005047 Latimeria chalumnae ENSLACG00000005047 I
ENSLACG00000005481 Latimeria chalumnae ENSLACG00000005481 I
OLIG3 Loxodonta africana ENSLAFG00000005655 I
OLIG2 Loxodonta africana ENSLAFG00000028347 I
ENSLOCG00000017350 Lepisosteus oculatus ENSLOCG00000017350 I
ENSLOCG00000017506 Lepisosteus oculatus ENSLOCG00000017506 I
ENSMEUG00000002914 Macropus eugenii ENSMEUG00000002914 I
ENSMICG00000004313 Microcebus murinus ENSMICG00000004313 I
OLIG3 Myotis lucifugus ENSMLUG00000026705 I
OLIG2 Macaca mulatta ENSMMUG00000017652 I
ENSMMUG00000029441 Macaca mulatta ENSMMUG00000029441 I
OLIG3 Monodelphis domestica ENSMODG00000017418 I
OLIG2 Monodelphis domestica ENSMODG00000025338 I
ENSMPUG00000001227 Mustela putorius furo ENSMPUG00000001227 I
ENSMPUG00000018873 Mustela putorius furo ENSMPUG00000018873 I
ENSNLEG00000019305 Nomascus leucogenys ENSNLEG00000019305 I
OLIG3 Ornithorhynchus anatinus ENSOANG00000014796 I
ENSOARG00000002572 Ovis aries ENSOARG00000002572 I
OLIG3 Oryctolagus cuniculus ENSOCUG00000017289 I
OLIG3 Otolemur garnettii ENSOGAG00000011977 I
OLIG2 Otolemur garnettii ENSOGAG00000026818 I
ENSONIG00000017079 Oreochromis niloticus ENSONIG00000017079 I
ENSONIG00000020727 Oreochromis niloticus ENSONIG00000020727 I
OLIG3 Ochotona princeps ENSOPRG00000003267 I
olig2 Oryzias latipes ENSORLG00000010211 I
ENSPANG00000006465 Papio anubis ENSPANG00000006465 I
ENSPANG00000007664 Papio anubis ENSPANG00000007664 I
OLIG3 Procavia capensis ENSPCAG00000002488 I
OLIG2 Procavia capensis ENSPCAG00000005657 I
ENSPFOG00000004604 Poecilia formosa ENSPFOG00000004604 I
ENSPFOG00000015805 Poecilia formosa ENSPFOG00000015805 I
ENSPFOG00000019968 Poecilia formosa ENSPFOG00000019968 I
ENSPPYG00000011369 Pongo abelii ENSPPYG00000011369 I
ENSPSIG00000001778 Pelodiscus sinensis ENSPSIG00000001778 I
ENSPSIG00000001988 Pelodiscus sinensis ENSPSIG00000001988 I
OLIG2 Pan troglodytes ENSPTRG00000013863 I
OLIG3 Pan troglodytes ENSPTRG00000018643 I
Olig3 Rattus norvegicus ENSRNOG00000012057 I
Olig2 Rattus norvegicus ENSRNOG00000028658 I
ENSSHAG00000007183 Sarcophilus harrisii ENSSHAG00000007183 I
OLIG3 Sus scrofa ENSSSCG00000004155 I
ENSSTOG00000020214 Ictidomys tridecemlineatus ENSSTOG00000020214 I
ENSSTOG00000020899 Ictidomys tridecemlineatus ENSSTOG00000020899 I
OLIG3 Tupaia belangeri ENSTBEG00000014468 I
OLIG3 Taeniopygia guttata ENSTGUG00000010892 I
olig2 Tetraodon nigroviridis ENSTNIG00000000234 I
olig2 Tetraodon nigroviridis ENSTNIG00000003641 I
OLIG3 Tetraodon nigroviridis ENSTNIG00000017004 I
olig2 Takifugu rubripes ENSTRUG00000014944 I
ENSXMAG00000001116 Xiphophorus maculatus ENSXMAG00000001116 I
ENSXMAG00000018245 Xiphophorus maculatus ENSXMAG00000018245 I
LotgiG70673 Lottia gigantea LotgiG70673 I
Aan_R009789 Calypte anna Aan_R009789 I
Afo_R014889 Aptenodytes forsteri Afo_R014889 I
Alligator_sinensis_CCG012594.1 Alligator sinensis Alligator_sinensis_CCG012594.1 I
Brh_R007937 Buceros rhinoceros Brh_R007937 I
Cmyd_10005462 Chelonia mydas Cmyd_10005462 I
Cmyd_10011949 Chelonia mydas Cmyd_10011949 I
ENSBTAP00000021340-D1 Bos grunniens ENSBTAP00000021340-D1 I
ENSP00000356708-D1 Bos grunniens ENSP00000356708-D1 I
ENSP00000356708 Macaca fascicularis ENSP00000356708 I
Gfo_R003786 Geospiza fortis Gfo_R003786 I
Myotis_brandtii_OLIG3_10035715 Myotis brandtii Myotis_brandtii_OLIG3_10035715 I
Ogr17936 Ophisaurus gracilis Ogr17936 I
Pvit_10685 Pogona vitticeps Pvit_10685 I
Pvit_17282 Pogona vitticeps Pvit_17282 I
Ocbimv22001042m.g Octopus bimaculoides Ocbimv22001042m.g I
Sakowv30018772m.g Saccoglossus kowalevskii Sakowv30018772m.g I
olig3 Xenopus tropicalis XB-GENE-919789 I
XP_002938491 Xenopus tropicalis XP_002938491 I
BGLB010755 Biomphalaria glabrata BGLB010755 I
D915_09810 Fasciola hepatica D915_09810 I
ECPE_0001595001 Echinostoma caproni ECPE_0001595001 I