fgenesh2_kg.3__982__AT3G09600.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.3__982__AT3G09600.1 T270780_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.909 1.000
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.909 1.000
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.909 1.000
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.909 0.978
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.909 0.978
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.891 0.935
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.891 0.935
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.891 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.891
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.795 0.870
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.795 0.870
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.795 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.717
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.674
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.674
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.674
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__982__AT3G09600.1 Myb 43 88

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRDM14 Homo sapiens ENSG00000147596 D 0.000
ENSP00000276594 Macaca fascicularis ENSP00000276594 I 0.000
ENSAMEG00000006227 Ailuropoda melanoleuca ENSAMEG00000006227 I 0.000
ENSBTAP00000000066-D1 Bos grunniens ENSBTAP00000000066-D1 I 0.000
ENSTSYG00000010610 Tarsius syrichta ENSTSYG00000010610 I 0.000
PRDM14 Pan troglodytes ENSPTRG00000020331 I 0.000
ENSPPYG00000018658 Pongo abelii ENSPPYG00000018658 I 0.000
ENSPANG00000024378 Papio anubis ENSPANG00000024378 I 0.000
ENSOARG00000003528 Ovis aries ENSOARG00000003528 I 0.000
ENSMPUG00000010629 Mustela putorius furo ENSMPUG00000010629 I 0.000
ENSMMUG00000014191 Macaca mulatta ENSMMUG00000014191 I 0.000
ENSFCAG00000001436 Felis catus ENSFCAG00000001436 I 0.000
PRDM14 Equus caballus ENSECAG00000014777 I 0.000
ENSDNOG00000014500 Dasypus novemcinctus ENSDNOG00000014500 I 0.000
ENSCSAG00000013856 Chlorocebus sabaeus ENSCSAG00000013856 I 0.000
PRDM14 Cavia porcellus ENSCPOG00000027176 I 0.000
PRDM14 Callithrix jacchus ENSCJAG00000008052 I 0.000
PRDM14 Canis familiaris ENSCAFG00000007696 I 0.000
PRDM14 Bos taurus ENSBTAG00000000060 I 0.000