AtMYB9 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.6__1669__AT5G16770.1 T270814_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.817 0.914
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.817 0.914
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.751 0.774
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.730 0.796
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.730 0.796
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.703 0.806
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.703 0.806
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.696 0.785
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.696 0.785
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.690 0.731
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.669 0.720
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.666 0.710
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.666 0.710
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.665 0.742
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.665 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__1669__AT5G16770.1 Myb 14 61
fgenesh2_kg.6__1669__AT5G16770.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

629 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB15 Arabidopsis thaliana AT3G23250 D
MYB3 Arabidopsis thaliana AT1G22640 D
GLYMA02G12254 Glycine max GLYMA02G12254 I 0.673
Gorai.011G122800 Gossypium raimondii Gorai.011G122800 I 0.751
LjT39N06.160.nd Lotus japonicus LjT39N06.160.nd N
PK22178.1 Cannabis sativa PK22178.1 N
PK07876.1 Cannabis sativa PK07876.1 N
PK07010.1 Cannabis sativa PK07010.1 N
SapurV1A.2154s0020 Salix purpurea SapurV1A.2154s0020 N
SapurV1A.2099s0020 Salix purpurea SapurV1A.2099s0020 N
Eucgr.H02157 Eucalyptus grandis Eucgr.H02157 N
mgf018170m Mimulus guttatus mgf018170m N
30072.m000986 Ricinus communis 30072.m000986 N
TRIUR3_12584 Triticum urartu TRIUR3_12584 N
Traes_1DL_EDA7A1267 Triticum aestivum Traes_1DL_EDA7A1267 N
Traes_1BL_736D60ADD Triticum aestivum Traes_1BL_736D60ADD N
Traes_1AL_002FAE6E8 Triticum aestivum Traes_1AL_002FAE6E8 N
ORUFI01G08780 Oryza rufipogon ORUFI01G08780 N