CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

fgenesh2_kg.9__1__AT4G13480.1 *(Arabidopsis lyrata)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	fgenesh2_kg.9__1__AT4G13480.1	T270859_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATMYB121 M07091_2.00	Arabidopsis thaliana	NYNWACCTAMYHHH	DDDRKTAGGTWNRN	Dap-seq OMalley et al.(2016) MYB121_col_a	0.756	0.796
MYB62 M07027_2.00	Arabidopsis thaliana	NHRCCTAAYTWNHNN	NNDNWARTTAGGYDN	Dap-seq OMalley et al.(2016) MYB62_col_a	0.726	0.720
MYB62 M07028_2.00	Arabidopsis thaliana	HNKRCCTAACTHH	DDAGTTAGGYMND	Dap-seq OMalley et al.(2016) MYB62_colamp_a	0.726	0.720
MYB116 M07014_2.00	Arabidopsis thaliana	NRCCTAAYTWNWNNN	NNNWNWARTTAGGYN	Dap-seq OMalley et al.(2016) MYB116_col_a	0.707	0.688
MYB116 M07015_2.00	Arabidopsis thaliana	HNTRCCTAACTHH	DDAGTTAGGYAND	Dap-seq OMalley et al.(2016) MYB116_colamp_a	0.707	0.688
MYB59 M00883_2.00	Arabidopsis thaliana	NKACCTAAYN	NRTTAGGTMN	PBM Franco-Zorrilla et al.(2014) MYB59	0.672	0.710
MYB108 M07065_2.00	Arabidopsis thaliana	RCCWAAYYNNNNHNH	DNDNNNNRRTTWGGY	Dap-seq OMalley et al.(2016) BOS1_col_a	0.667	0.699
MYB24 M02311_2.00	Arabidopsis thaliana	RCCDAMYNN	NNRKTHGGY	PBM Weirauch et al.(2014) pTH8662	0.663	0.731
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
fgenesh2_kg.9__1__AT4G13480.1	Myb	8	55	KGPWTAEEDRLLIEYVRVHGEGRWNSVSKLAGLKRNGKSCRLRWVNYL
fgenesh2_kg.9__1__AT4G13480.1	Myb	61	106	RGQITPHEENIILELHAKWGNRWSSIARSLPGRTDNEIKNYWRTHF

Links
Other Myb/SANT family TFs
Other *Arabidopsis lyrata* TFs

517 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BAUCODRAFT_31051	Baudoinia compniacensis	BAUCODRAFT_31051	N
DOTSEDRAFT_22662	Dothistroma septosporum	DOTSEDRAFT_22662	N
SEPMUDRAFT_61970	Sphaerulina musiva	SEPMUDRAFT_61970	N
estExt_fgenesh1_pg.C_chr_10279	Mycosphaerella graminicola	estExt_fgenesh1_pg.C_chr_10279	N