MTR_5g041570 (Medicago truncatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 MTR_5g041570 T274860_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB105
M07031_2.00 		Arabidopsis thaliana
TAACGGTWWHDDW
WHHDWWACCGTTA		 Dap-seq
OMalley et al.(2016)
MYB105_col_a 		0.800 0.946
MYB105
M07032_2.00 		Arabidopsis thaliana
NNDWHDHTAACGGWWWH
DWWWCCGTTADHDWHNN		 Dap-seq
OMalley et al.(2016)
MYB105_colamp_a 		0.800 0.946
MYB56
M07130_2.00 		Arabidopsis thaliana
DDHNHTAACKGWHWH
DWDWCMGTTADNDHH		 Dap-seq
OMalley et al.(2016)
MYB56_col_a 		0.774 0.839
MYB56
M07131_2.00 		Arabidopsis thaliana
DNNHTAACGGWHWHD
HDWDWCCGTTADNNH		 Dap-seq
OMalley et al.(2016)
MYB56_colamp_a 		0.774 0.839
MYB52
M00871_2.00 		Arabidopsis thaliana
NNNAMCNDNN
NNHNGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB52 		0.772 0.796
MYB52
M07007_2.00 		Arabidopsis thaliana
TAACGGTNHHD
HDDNACCGTTA		 Dap-seq
OMalley et al.(2016)
MYB52_col_a 		0.772 0.796
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES96795 Myb 134 180
AES96795 Myb 186 231

Links

Other Myb/SANT family TFs
Other Medicago truncatula TFs

384 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G051256 Zea mays GRMZM2G051256 I
GRMZM2G111045 Zea mays GRMZM2G111045 I
MLOC_18177 Hordeum vulgare MLOC_18177 I
SELMODRAFT_39454 Selaginella moellendorffii SELMODRAFT_39454 I
SELMODRAFT_39481 Selaginella moellendorffii SELMODRAFT_39481 I
TRIUR3_30803 Triticum urartu TRIUR3_30803 N
SELMODRAFT_89380 Selaginella moellendorffii SELMODRAFT_89380 N
Ca_06925 Cicer arietinum Ca_06925 N
Ca_16645 Cicer arietinum Ca_16645 N
30027.m000837 Ricinus communis 30027.m000837 N
e_gw1.1.456.1 Physcomitrella patens e_gw1.1.456.1 N
e_gw1.2.476.1 Physcomitrella patens e_gw1.2.476.1 N
e_gw1.389.24.1 Physcomitrella patens e_gw1.389.24.1 N
mgf004018m Mimulus guttatus mgf004018m N
evm.TU.supercontig_111.24 Carica papaya evm.TU.supercontig_111.24 N
evm.TU.supercontig_1993.2 Carica papaya evm.TU.supercontig_1993.2 N
Lus10030442.g Linum usitatissimum Lus10030442.g N
Pavir.Aa01543 Panicum virgatum Pavir.Aa01543 N
chr1.CM0600.130.nd Lotus japonicus chr1.CM0600.130.nd N
PDK_20s1698071g001 Phoenix dactylifera PDK_20s1698071g001 N
Traes_2BL_216652F6B Triticum aestivum Traes_2BL_216652F6B N
SELMODRAFT_90153 Selaginella moellendorffii SELMODRAFT_90153 N
AMTR_s00009p00257990 Amborella trichopoda AMTR_s00009p00257990 N
SELMODRAFT_84608 Selaginella moellendorffii SELMODRAFT_84608 N
SELMODRAFT_78848 Selaginella moellendorffii SELMODRAFT_78848 N
SELMODRAFT_78303 Selaginella moellendorffii SELMODRAFT_78303 N
SELMODRAFT_39499 Selaginella moellendorffii SELMODRAFT_39499 N
SELMODRAFT_39496 Selaginella moellendorffii SELMODRAFT_39496 N
POPTR_0002s15900 Populus trichocarpa POPTR_0002s15900 N
OS08G0433400 Oryza sativa OS08G0433400 N
ORUFI06G25490 Oryza rufipogon ORUFI06G25490 N
ORGLA02G0218900 Oryza glaberrima ORGLA02G0218900 N
MTR_5g007300 Medicago truncatula MTR_5g007300 N
GLYMA05G17994 Glycine max GLYMA05G17994 N