OBART05G04360 (Oryza barthii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OBART05G04360 T275516_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.748 0.696
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.748 0.696
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.723 0.696
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.723 0.696
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.715 0.696
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.672 0.696
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.664 0.696
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.664 0.696
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.664 0.696
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.664 0.696
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.664 0.674
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.664 0.674
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.663 0.674
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.663 0.674
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.663 0.674
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART05G04360.1 Myb 25 70

Links

Other Myb/SANT family TFs
Other Oryza barthii TFs

351 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr8G33180_001 Musa acuminata GSMUA_Achr8G33180_001 I
Traes_7DL_88B60203A Triticum aestivum Traes_7DL_88B60203A N
ORGLA08G0018000 Oryza glaberrima ORGLA08G0018000 N
ORUFI02G01220 Oryza rufipogon ORUFI02G01220 N
ORUFI08G02650 Oryza rufipogon ORUFI08G02650 N
OS02G0116600 Oryza sativa OS02G0116600 N
OS08G0138500 Oryza sativa OS08G0138500 N
Sb04g001200 Sorghum bicolor Sb04g001200 N
Si014339m.g Setaria italica Si014339m.g N
Si018232m.g Setaria italica Si018232m.g N
Traes_7AL_B9345EB83 Triticum aestivum Traes_7AL_B9345EB83 N
Traes_7BL_6324A95B5 Triticum aestivum Traes_7BL_6324A95B5 N
OPUNC08G02220 Oryza punctata OPUNC08G02220 N
TRIUR3_32784 Triticum urartu TRIUR3_32784 N
Gorai.009G176000 Gossypium raimondii Gorai.009G176000 N
Pavir.Aa03509 Panicum virgatum Pavir.Aa03509 N
Pavir.Ab00172 Panicum virgatum Pavir.Ab00172 N
Pavir.Ab02693 Panicum virgatum Pavir.Ab02693 N
Pavir.Fa02284 Panicum virgatum Pavir.Fa02284 N
Pavir.Fb00223 Panicum virgatum Pavir.Fb00223 N
Pavir.J05070 Panicum virgatum Pavir.J05070 N
OBART02G01220 Oryza barthii OBART02G01220 N
BGIOSGA027691 Oryza indica BGIOSGA027691 N
BRADI3G14590 Brachypodium distachyon BRADI3G14590 N
F775_31340 Aegilops tauschii F775_31340 N
GRMZM2G314882 Zea mays GRMZM2G314882 N
GRMZM5G856837 Zea mays GRMZM5G856837 N
LPERR02G01020 Leersia perrieri LPERR02G01020 N
LPERR08G02470 Leersia perrieri LPERR08G02470 N
MLOC_6315 Hordeum vulgare MLOC_6315 N
OB08G12550 Oryza brachyantha OB08G12550 N
ORGLA02G0011200 Oryza glaberrima ORGLA02G0011200 N
OGLUM02G01100 Oryza glumaepatula OGLUM02G01100 N
OGLUM08G02420 Oryza glumaepatula OGLUM08G02420 N
OLONG_000275 Oryza longistaminata OLONG_000275 N
OLONG_003616 Oryza longistaminata OLONG_003616 N
OMERI02G00630 Oryza meridionalis OMERI02G00630 N
ONIVA02G01100 Oryza nivara ONIVA02G01100 N
ONIVA08G02550 Oryza nivara ONIVA08G02550 N
OPUNC02G00650 Oryza punctata OPUNC02G00650 N
BGIOSGA007247 Oryza indica BGIOSGA007247 N