CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OMERI04G19240
(
Oryza meridionalis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
OMERI04G19240
T276089_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CCA1
M00875_2.00
Arabidopsis thaliana
NDNRWATCN
NGATWYNHN
PBM
Franco-Zorrilla et al.(2014)
CCA1
0.746
0.717
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
0.805
0.804
CCA1
M11039_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CCA1_Q5
0.746
0.717
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH
DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
0.805
0.804
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.805
0.804
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN
NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.734
0.717
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
0.805
0.804
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
0.805
0.804
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT
AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.788
0.848
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.788
0.848
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN
NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.778
0.804
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT
AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.758
0.783
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.758
0.783
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW
WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.758
0.783
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OMERI04G19240.1
Myb
59
111
REKWTEDEHKLFLEALQLHGRAWRRIQGYLALLAEHIGTKTAVQIRSHAQKFF
OMERI04G19240.2
Myb
59
104
REKWTEDEHKLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFF
OMERI04G19240.3
Myb
59
104
REKWTEDEHKLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFF
Links
Other
Myb/SANT
family TFs
Other
Oryza meridionalis
TFs
277 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ZFP37
Canis familiaris
ENSCAFG00000028890
N
ZFP37
Callithrix jacchus
ENSCJAG00000017766
N
ENSCSAG00000012373
Chlorocebus sabaeus
ENSCSAG00000012373
N
ZFP37
Dasypus novemcinctus
ENSDNOG00000048008
N
ZFP37
Homo sapiens
ENSG00000136866
N
ZFP37
Gorilla gorilla
ENSGGOG00000000731
N
ZFP37
Microcebus murinus
ENSMICG00000001134
N
ZFP37
Macaca mulatta
ENSMMUG00000002079
N
ENSNLEG00000016581
Nomascus leucogenys
ENSNLEG00000016581
N
ENSPANG00000025771
Papio anubis
ENSPANG00000025771
N
ZFP37
Pan troglodytes
ENSPTRG00000021269
N
ZFP37
Tursiops truncatus
ENSTTRG00000009049
N
ZFP37
Vicugna pacos
ENSVPAG00000010606
N
ENSP00000363344
Macaca fascicularis
ENSP00000363344
N