POPTR_0004s08650 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0004s08650 T278263_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.742 0.763
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.742 0.763
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.740 0.774
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.689 0.677
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.689 0.677
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.689 0.677
MYB111
M00882_2.00 		Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB111 		0.679 0.731
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.674 0.710
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.674 0.710
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.674 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s08650.1 Myb 13 60
POPTR_0004s08650.1 Myb 66 111

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

783 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Hsal_04211--NA Harpegnathos saltator Hsal_04211--NA N
nRc.2.0.1.g02816 Romanomermis culicivorax nRc.2.0.1.g02816 N
L892_g10863 Steinernema scapterisci L892_g10863 N
L596_g2494 Steinernema carpocapsae L596_g2494 N
HCOI01666100 Haemonchus contortus HCOI01666100 N
ASIM_0001464801 Anisakis simplex ASIM_0001464801 N
ANCCEY_10235 Ancylostoma ceylanicum ANCCEY_10235 N
ALUE_0001309901 Ascaris lumbricoides ALUE_0001309901 N
XP_002157431.1 Hydra magnipapillata XP_002157431.1 N
XP_002944476 Xenopus tropicalis XP_002944476 N
Hsal_09927--NA Harpegnathos saltator Hsal_09927--NA N
WUBG_07365 Wuchereria bancrofti WUBG_07365 N
Cflo_14905--NA Camponotus floridanus Cflo_14905--NA N
SINV24002 Solenopsis invicta SINV24002 N
MCINX013767 Melitaea cinxia MCINX013767 N
GK24763 Drosophila willistoni FBgn0226723 N
ENSTNIG00000002824 Tetraodon nigroviridis ENSTNIG00000002824 N
CGI_10026391 Crassostrea gigas CGI_10026391 N
ACYPI061276 Acyrthosiphon pisum ACYPI061276 N
ACEP11313 Atta cephalotes ACEP11313 N
WUBG_15783 Wuchereria bancrofti WUBG_15783 N