CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

VIT_09s0002g03540 *(Vitis vinifera)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	VIT_09s0002g03540	T281992_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT3G16350 M01078_2.00	Arabidopsis thaliana	NYTATCYDNN	NNHRGATARN	PBM Sullivan et al.(2014) pTH7149	0.849	0.957
PK29550.1 M02358_2.00	Cannabis sativa	NNHDATCYNN	NNRGATHDNN	PBM Weirauch et al.(2014) pTH9595	0.839	0.936
fgenesh1_pg.scaffold_70000111 M02342_2.00	Physcomitrella patens	NNHNATCBN	NVGATNDNN	PBM Weirauch et al.(2014) pTH8492	0.828	0.915
PK23829.1 M02355_2.00	Cannabis sativa	VTTATCCD	HGGATAAB	PBM Weirauch et al.(2014) pTH9592	0.821	0.894
PK17526.1 M02353_2.00	Cannabis sativa	NNTTATCCAN	NTGGATAANN	PBM Weirauch et al.(2014) pTH9588	0.810	0.851
AT1G74840 M02291_2.00	Arabidopsis thaliana	NGWTATCCRNN	NNYGGATAWCN	PBM Weirauch et al.(2014) pTH7074	0.810	0.851
AT1G74840 M07037_2.00	Arabidopsis thaliana	HHTTATCCAHW	WDTGGATAADD	Dap-seq OMalley et al.(2016) At1g74840_col100_a	0.810	0.851
AT1G74840 M07038_2.00	Arabidopsis thaliana	HWNHTTATCCAHWW	WWDTGGATAADNWD	Dap-seq OMalley et al.(2016) At1g74840_colamp_a	0.810	0.851
PK00738.1 M02346_2.00	Cannabis sativa	NYWATCYDNN	NNHRGATWRN	PBM Weirauch et al.(2014) pTH9487	0.790	0.915
KUA1 M02312_2.00	Arabidopsis thaliana	NNTTATCCDN	NHGGATAANN	PBM Weirauch et al.(2014) pTH7647	0.789	0.894
KUA1 M07136_2.00	Arabidopsis thaliana	WWHHTTATCCAHWW	WWDTGGATAADDWW	Dap-seq OMalley et al.(2016) At5g47390_colamp_a	0.789	0.894
KUA1 M07137_2.00	Arabidopsis thaliana	HHWDYHTTATCCAHW	WDTGGATAADRHWDD	Dap-seq OMalley et al.(2016) At5g47390_col_b	0.789	0.894
AT1G19000 M02287_2.00	Arabidopsis thaliana	NYTATCYDNN	NNHRGATARN	PBM Weirauch et al.(2014) pTH7120	0.759	0.830
AT1G19000 M07012_2.00	Arabidopsis thaliana	HDYHTTATCCAHWW	WWDTGGATAADRHD	Dap-seq OMalley et al.(2016) At1g19000_col_a	0.759	0.830
AT1G19000 M07013_2.00	Arabidopsis thaliana	WDYNTTATCCAHWW	WWDTGGATAANRHW	Dap-seq OMalley et al.(2016) At1g19000_colamp_a	0.759	0.830
AT5G61620 M07149_2.00	Arabidopsis thaliana	WWHHTTATCCAHWWN	NWWDTGGATAADDWW	Dap-seq OMalley et al.(2016) AT5G61620_col_a	0.743	0.787
AT5G61620 M07150_2.00	Arabidopsis thaliana	YHTTATCCAHW	WDTGGATAADR	Dap-seq OMalley et al.(2016) AT5G61620_colamp_a	0.743	0.787
AT5G56840 M07144_2.00	Arabidopsis thaliana	WWYMTTATCCAWWWN	NWWWTGGATAAKRWW	Dap-seq OMalley et al.(2016) AT5G56840_col_a	0.718	0.809
AT5G56840 M07145_2.00	Arabidopsis thaliana	HHHWWYHTTATCCWHW	WDWGGATAADRWWDDD	Dap-seq OMalley et al.(2016) AT5G56840_colamp_a	0.718	0.809
0600010132 M02360_2.00	Ostreococcus tauri	NNVTTATCCDNNN	NNNHGGATAABNN	PBM Weirauch et al.(2014) pTH9441	0.712	0.830
AT3G10580 M07072_2.00	Arabidopsis thaliana	AWBCTTATCYWHWHH	DDWDWRGATAAGVWT	Dap-seq OMalley et al.(2016) AT3G10580_col_a	0.709	0.702
AT3G10580 M07073_2.00	Arabidopsis thaliana	CCGAWAAWNTCGGDD	HHCCGANWTTWTCGG	Dap-seq OMalley et al.(2016) AT3G10580_colamp_a	0.709	0.702
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
VIT_09s0002g03540.t01	Myb	10	57	GVPWTEEEHRLFLFGLQRLGKGDWRGISRNYVISRTPTQVASHAQKYF

Links
Other Myb/SANT family TFs
Other *Vitis vinifera* TFs

578 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
EFV60233	Trichinella spiralis	EFV60233	N
D917_04448	Trichinella nativa	D917_04448	N
D918_08892	Trichuris suis	D918_08892	N
TMUE_s0005008700	Trichuris muris	TMUE_s0005008700	N

VIT_09s0002g03540 (Vitis vinifera) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

578 Related TFs

VIT_09s0002g03540 **(Vitis vinifera)
Myb/SANT**