Cagra.1194s0007 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1194s0007 T286018_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.909 0.989
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.909 0.989
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.776 0.796
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.775 0.839
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.775 0.839
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.757 0.785
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.757 0.785
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.735 0.742
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.703 0.720
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.703 0.720
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.693 0.806
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.693 0.785
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.693 0.785
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.678 0.753
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.678 0.753
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.666 0.796
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.666 0.796
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1194s0007.1.p Myb 14 61
Cagra.1194s0007.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

900 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
L596_g21980 Steinernema carpocapsae L596_g21980 N
TELCIR_05319 Teladorsagia circumcincta TELCIR_05319 N
TCNE_0001236501 Toxocara canis TCNE_0001236501 N
TCLT_0000451401 Thelazia callipaeda TCLT_0000451401 N
OFLC_0001358201 Onchocerca flexuosa OFLC_0001358201 N
OESDEN_04377 Oesophagostomum dentatum OESDEN_04377 N
nRc.2.0.1.g25601 Romanomermis culicivorax nRc.2.0.1.g25601 N
nOo.2.0.1.g01013 Onchocerca ochengi nOo.2.0.1.g01013 N
nLs.2.1.2.g00583 Litomosoides sigmodontis nLs.2.1.2.g00583 N
NECAME_03414 Necator americanus NECAME_03414 N
nDi.2.2.2.g02408 Dirofilaria immitis nDi.2.2.2.g02408 N
nAv.1.0.1.g02191 Acanthocheilonema viteae nAv.1.0.1.g02191 N
L898_g30040 Steinernema monticolum L898_g30040 N
L893_g2345 Steinernema glaseri L893_g2345 N
L892_g11079 Steinernema scapterisci L892_g11079 N
L889_g15502 Steinernema feltiae L889_g15502 N
WUBG_10166 Wuchereria bancrofti WUBG_10166 N
HPLM_0001566201 Haemonchus placei HPLM_0001566201 N
HCOI00202100 Haemonchus contortus HCOI00202100 N
Hba_00636 Heterorhabditis bacteriophora Hba_00636 N
GPUH_0002215801 Gongylonema pulchrum GPUH_0002215801 N
EEL_0000340601 Elaeophora elaphi EEL_0000340601 N
DME_0000413601 Dracunculus medinensis DME_0000413601 N
D918_01735 Trichuris suis D918_01735 N
ASIM_0001160201 Anisakis simplex ASIM_0001160201 N
ANCCEY_04433 Ancylostoma ceylanicum ANCCEY_04433 N
ANCCAN_15383 Ancylostoma caninum ANCCAN_15383 N
ALUE_0001180601 Ascaris lumbricoides ALUE_0001180601 N
Minc04978 Meloidogyne incognita Minc04978 N
WBGene00237735 Onchocerca volvulus WBGene00237735 N
LOAG_06215 Loa loa LOAG_06215 N
Bm4813 Brugia malayi Bm4813 N