CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cagra.1361s0065 *(Capsella grandiflora)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Cagra.1361s0065	T286031_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB58 M07005_2.00	Arabidopsis thaliana	NNYYYACCWAMCHHH	DDDGKTWGGTRRRNN	Dap-seq OMalley et al.(2016) MYB58_col_a	0.839	0.892
MYB58 M07006_2.00	Arabidopsis thaliana	HNNYHYACCWAMCHHHNNNNH	DNNNNDDDGKTWGGTRDRNND	Dap-seq OMalley et al.(2016) MYB58_colamp_a	0.839	0.892
AtMYB10 M07081_2.00	Arabidopsis thaliana	YYYACCWAMCHHHHNH	DNDDDDGKTWGGTRRR	Dap-seq OMalley et al.(2016) MYB10_col_a	0.747	0.806
AtMYB10 M07082_2.00	Arabidopsis thaliana	NYYYACCWAMCHHH	DDDGKTWGGTRRRN	Dap-seq OMalley et al.(2016) MYB10_colamp_a	0.747	0.806
MYB107 M07061_2.00	Arabidopsis thaliana	NDDWDBBYYACCWAMYHH	DDRKTWGGTRRVVHWHHN	Dap-seq OMalley et al.(2016) MYB107_col_a	0.724	0.753
MYB107 M07062_2.00	Arabidopsis thaliana	WNBYYYACCWAMYH	DRKTWGGTRRRVNW	Dap-seq OMalley et al.(2016) MYB107_colamp_a	0.724	0.753
MYB15 M07084_2.00	Arabidopsis thaliana	NNNHNNHHNHHYCACCWAMYH	DRKTWGGTGRDDNDDNNDNNN	Dap-seq OMalley et al.(2016) ATY19_col_a	0.717	0.774
MYB15 M02699_2.00	Arabidopsis thaliana	CCACCTACCSBBG	CVVSGGTAGGTGG	SELEX Mathelier et al.(2014) MA0574.1	0.717	0.774
MYB15 M11041_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ATMYB15_01	0.717	0.774
MYB15 M11042_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ATMYB15_Q2	0.717	0.774
ATMYB13 M06999_2.00	Arabidopsis thaliana	HYCACCWACCHHHNH	DNDDDGGTWGGTGRD	Dap-seq OMalley et al.(2016) MYB13_col_a	0.698	0.753
ATMYB13 M07000_2.00	Arabidopsis thaliana	BYCACCWACCHHHNNHNN	NNDNNDDDGGTWGGTGRV	Dap-seq OMalley et al.(2016) MYB13_colamp_a	0.698	0.753
PK28187.1 M01286_2.00	Cannabis sativa	TACCTACC	GGTAGGTA	PBM Lambert et al.(2019) pTH11305	0.674	0.699
AtMYB93 M07020_2.00	Arabidopsis thaliana	HDNYYYAMCWAMYHHHHHHHH	DDDDDDDDRKTWGKTRRRNHD	Dap-seq OMalley et al.(2016) MYB93_col_a	0.667	0.699
AtMYB93 M07021_2.00	Arabidopsis thaliana	NNHNBYYYAMCWAMY	RKTWGKTRRRVNDNN	Dap-seq OMalley et al.(2016) MYB93_colamp_a	0.667	0.699
MYB92 M07123_2.00	Arabidopsis thaliana	NHHACCTAMY	RKTAGGTDDN	Dap-seq OMalley et al.(2016) MYB92_100ng20cy_b	0.667	0.667
MYB92 M07124_2.00	Arabidopsis thaliana	NNNNWNNYYYACCWAMYHH	DDRKTWGGTRRRNNWNNNN	Dap-seq OMalley et al.(2016) MYB92_colamp_a	0.667	0.667
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cagra.1361s0065.1.p	Myb	16	63	RGPWSPEEDLKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYL
Cagra.1361s0065.1.p	Myb	69	114	RGNFTAEEEATIIKLHQNYGNKWSKIASHLPGRTDNEIKNVWHTHL

Links
Other Myb/SANT family TFs
Other *Capsella grandiflora* TFs

569 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ALUE_0001297901	Ascaris lumbricoides	ALUE_0001297901	N

Cagra.1361s0065 (Capsella grandiflora) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

569 Related TFs

Cagra.1361s0065 **(Capsella grandiflora)
Myb/SANT**