Cagra.3373s0030 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.3373s0030 T286112_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.897 0.968
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.732 0.742
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.732 0.742
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.712 0.731
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.712 0.731
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.707 0.710
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.707 0.710
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.672 0.742
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.662 0.699
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.662 0.699
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.662 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3373s0030.1.p Myb 14 61
Cagra.3373s0030.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

543 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bhlha15 Mus musculus ENSMUSG00000052271 D
BHLHA15 Homo sapiens ENSG00000180535 D
Aan_R003120 Calypte anna Aan_R003120 I
ENSPFOG00000013242 Poecilia formosa ENSPFOG00000013242 I
ENSPPYG00000017361 Pongo abelii ENSPPYG00000017361 I
ENSPSIG00000001236 Pelodiscus sinensis ENSPSIG00000001236 I
BHLHA15 Pan troglodytes ENSPTRG00000019434 I
Bhlha15 Rattus norvegicus ENSRNOG00000025164 I
ENSSHAG00000015620 Sarcophilus harrisii ENSSHAG00000015620 I
ENSSSCG00000007600 Sus scrofa ENSSSCG00000007600 I
ENSSTOG00000009728 Ictidomys tridecemlineatus ENSSTOG00000009728 I
bhlha15 Tetraodon nigroviridis ENSTNIG00000012887 I
bhlha15 Takifugu rubripes ENSTRUG00000016815 I
BHLHA15 Tursiops truncatus ENSTTRG00000015701 I
ENSXMAG00000014837 Xiphophorus maculatus ENSXMAG00000014837 I
bhlha15 Oryzias latipes ENSORLG00000003401 I
Afo_R012275 Aptenodytes forsteri Afo_R012275 I
Alligator_sinensis_CCG022066.1 Alligator sinensis Alligator_sinensis_CCG022066.1 I
Brh_R005630 Buceros rhinoceros Brh_R005630 I
Cmyd_10012423 Chelonia mydas Cmyd_10012423 I
ENSP00000326391-D1 Bos grunniens ENSP00000326391-D1 I
ENSP00000326391 Macaca fascicularis ENSP00000326391 I
Ogr03050 Ophisaurus gracilis Ogr03050 I
Pvit_16465 Pogona vitticeps Pvit_16465 I
Tal_R009599 Tyto alba Tal_R009599 I
estExt_fgenesh2_pg.C_2400032 Branchiostoma floridae estExt_fgenesh2_pg.C_2400032 I
XP_002931994 Xenopus tropicalis XP_002931994 I
BHLHA15 Loxodonta africana ENSLAFG00000000139 I
ENSAMXG00000025873 Astyanax mexicanus ENSAMXG00000025873 I
ENSAPLG00000001024 Anas platyrhynchos ENSAPLG00000001024 I
BHLHA15 Bos taurus ENSBTAG00000046010 I
BHLHA15 Canis familiaris ENSCAFG00000015425 I
BHLHA15 Callithrix jacchus ENSCJAG00000023085 I
ENSCPOG00000009423 Cavia porcellus ENSCPOG00000009423 I
ENSCSAG00000019492 Chlorocebus sabaeus ENSCSAG00000019492 I
bhlha15 Danio rerio ENSDARG00000045166 I
ENSECAG00000012532 Equus caballus ENSECAG00000012532 I
bhlha15 Gasterosteus aculeatus ENSGACG00000009403 I
ENSGMOG00000003972 Gadus morhua ENSGMOG00000003972 I
ENSLACG00000013715 Latimeria chalumnae ENSLACG00000013715 I
ENSPANG00000010823 Papio anubis ENSPANG00000010823 I
BHLHA15 Meleagris gallopavo ENSMGAG00000015527 I
BHLHA15 Myotis lucifugus ENSMLUG00000009476 I
ENSMMUG00000015478 Macaca mulatta ENSMMUG00000015478 I
BHLHA15 Monodelphis domestica ENSMODG00000025044 I
ENSMPUG00000020102 Mustela putorius furo ENSMPUG00000020102 I
ENSNLEG00000018875 Nomascus leucogenys ENSNLEG00000018875 I
BHLHA15 Ornithorhynchus anatinus ENSOANG00000001937 I
BHLHA15 Oryctolagus cuniculus ENSOCUG00000025058 I
BHLHA15 Otolemur garnettii ENSOGAG00000010106 I
ENSONIG00000021203 Oreochromis niloticus ENSONIG00000021203 I
ENSACAG00000012378 Anolis carolinensis ENSACAG00000012378 I