Cagra.5641s0019 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.5641s0019 T286167_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.849 0.979
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.849 0.957
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.841 0.957
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.841 0.957
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.831 0.936
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.5641s0019.1.p Myb 537 587

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SEPMUDRAFT_148959 Sphaerulina musiva SEPMUDRAFT_148959 I 0.000
M378DRAFT_463994 Amanita muscaria M378DRAFT_463994 I 0.000
M413DRAFT_29155 Hebeloma cylindrosporum M413DRAFT_29155 N 0.000
fgenesh3_kg.11__36__641_1_CCOZ_CCPA_CCPB_CCPC_EXTA Heterobasidion annosum fgenesh3_kg.11__36__641_1_CCOZ_CCPA_CCPB_CCPC_EXTA N 0.000
fgenesh1_pg.C_scaffold_4000174 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000174 N 0.000
SERLA73DRAFT_181394 Serpula lacrymans SERLA73DRAFT_181394 N 0.000
SCHCODRAFT_76401 Schizophyllum commune SCHCODRAFT_76401 N 0.000
PLICRDRAFT_45259 Plicaturopsis crispa PLICRDRAFT_45259 N 0.000
PLEOSDRAFT_174562 Pleurotus ostreatus PLEOSDRAFT_174562 N 0.000
PISMIDRAFT_112540 Pisolithus microcarpus PISMIDRAFT_112540 N 0.000
PILCRDRAFT_819471 Piloderma croceum PILCRDRAFT_819471 N 0.000
PILCRDRAFT_401124 Piloderma croceum PILCRDRAFT_401124 N 0.000
PHLGIDRAFT_125548 Phlebiopsis gigantea PHLGIDRAFT_125548 N 0.000
PAXRUDRAFT_822144 Paxillus rubicundulus PAXRUDRAFT_822144 N 0.000
PAXINDRAFT_170453 Paxillus involutus PAXINDRAFT_170453 N 0.000
AGABI2DRAFT_191136 Agaricus bisporus AGABI2DRAFT_191136 N 0.000
M378DRAFT_9324 Amanita muscaria M378DRAFT_9324 N 0.000
LACBIDRAFT_296989 Laccaria bicolor LACBIDRAFT_296989 N 0.000
K443DRAFT_670658 Laccaria amethystina K443DRAFT_670658 N 0.000
JAAARDRAFT_47740 Jaapia argillacea JAAARDRAFT_47740 N 0.000
JAAARDRAFT_194246 Jaapia argillacea JAAARDRAFT_194246 N 0.000
HETIRDRAFT_439748 Heterobasidion irregulare HETIRDRAFT_439748 N 0.000
GLOTRDRAFT_78300 Gloeophyllum trabeum GLOTRDRAFT_78300 N 0.000
GALMADRAFT_244440 Galerina marginata GALMADRAFT_244440 N 0.000
FOMPIDRAFT_132799 Fomitopsis pinicola FOMPIDRAFT_132799 N 0.000
CY34DRAFT_12675 Suillus luteus CY34DRAFT_12675 N 0.000
CC1G_07059 Coprinopsis cinerea CC1G_07059 N 0.000
BN946_scf184939.g72 Trametes cinnabarina BN946_scf184939.g72 N 0.000