CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Carubv10001399m.g *(Capsella rubella)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Carubv10001399m.g	T286217_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RVE5 M01079_2.00	Arabidopsis thaliana	NWAATATCHN	NDGATATTWN	PBM Sullivan et al.(2014) pTH7138	0.875	0.978
RVE5 M07100_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At4g01280_col_a	0.875	0.978
RVE5 M07101_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At4g01280_colamp_a	0.875	0.978
PK02532.1 M02347_2.00	Cannabis sativa	WAATATCTN	NAGATATTW	PBM Weirauch et al.(2014) pTH9579	0.837	0.913
RVE8 M01074_2.00	Arabidopsis thaliana	NNNRWATCNN	NNGATWYNNN	PBM Sullivan et al.(2014) pTH7136	0.829	0.891
RVE8 M07069_2.00	Arabidopsis thaliana	NHNWAAATATCT	AGATATTTWNDN	Dap-seq OMalley et al.(2016) At3g09600_col_a	0.829	0.891
RVE8 M07070_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At3g09600_colamp_a	0.829	0.891
RVE4 M07117_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LCL1_colamp_a	0.829	0.891
RVE4 M07118_2.00	Arabidopsis thaliana	NAAAATATCT	AGATATTTTN	Dap-seq OMalley et al.(2016) LCL1_col	0.829	0.891
RVE6 M01081_2.00	Arabidopsis thaliana	AATATCTD	HAGATATT	PBM Sullivan et al.(2014) pTH7151	0.827	0.891
RVE6 M07138_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At5g52660_col_a	0.827	0.891
RVE6 M07139_2.00	Arabidopsis thaliana	NNNWAAATATCT	AGATATTTWNNN	Dap-seq OMalley et al.(2016) At5g52660_colamp_a	0.827	0.891
mybG M02319_2.00	Dictyostelium discoideum	WAATATCT	AGATATTW	PBM Weirauch et al.(2014) pTH5362	0.808	0.870
PK08316.1 M02350_2.00	Cannabis sativa	NNNRWATCNN	NNGATWYNNN	PBM Weirauch et al.(2014) pTH9488	0.747	0.717
RVE1 M00879_2.00	Arabidopsis thaliana	AAATATCT	AGATATTT	PBM Franco-Zorrilla et al.(2014) RVE1	0.711	0.674
RVE1 M07128_2.00	Arabidopsis thaliana	NNNWAAATATCTNN	NNAGATATTTWNNN	Dap-seq OMalley et al.(2016) RVE1_col_a	0.711	0.674
RVE1 M07129_2.00	Arabidopsis thaliana	NNWAATATCW	WGATATTWNN	Dap-seq OMalley et al.(2016) RVE1_colamp_a	0.711	0.674
OS08G0157600 M02330_2.00	Oryza sativa	DNRTATCHN	NDGATAYNH	PBM Weirauch et al.(2014) pTH7793	0.691	0.674
LHY M06997_2.00	Arabidopsis thaliana	NWAAATATCT	AGATATTTWN	Dap-seq OMalley et al.(2016) LHY1_col_a	0.681	0.652
LHY M06998_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LHY1_colamp_a	0.681	0.652
RVE7 M01069_2.00	Arabidopsis thaliana	NDHRWATCNN	NNGATWYDHN	PBM Sullivan et al.(2014) pTH7081	0.668	0.609
RVE7 M02286_2.00	Arabidopsis thaliana	NDARTATCH	DGATAYTHN	PBM Weirauch et al.(2014) pTH7277	0.668	0.609
RVE7L M07071_2.00	Arabidopsis thaliana	NNNNWAAATATCWNN	NNWGATATTTWNNNN	Dap-seq OMalley et al.(2016) AT3G10113_col_a	0.668	0.609
RVE7 M07008_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) EPR1_colamp_a	0.668	0.609
RVE7 M07009_2.00	Arabidopsis thaliana	NWAAATATCTHN	NDAGATATTTWN	Dap-seq OMalley et al.(2016) EPR1_col	0.668	0.609
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Carubv10001399m	Myb	83	128	RENWTEQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSHAQKYF
Carubv10001417m	Myb	83	128	RENWTEQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSHAQKYF
Carubv10001429m	Myb	83	128	RENWTEQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSHAQKYF

Links
Other Myb/SANT family TFs
Other *Capsella rubella* TFs

431 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
br	Drosophila melanogaster	FBgn0000210	D
AMEC016444	Anopheles melas	AMEC016444	N
LCUP011136	Lucilia cuprina	LCUP011136	N
LDEC009788	Leptinotarsa decemlineata	LDEC009788	N
ACOM042123	Anopheles coluzzii	ACOM042123	N
ADIR009008	Anopheles dirus	ADIR009008	N
AEPI002763	Anopheles epiroticus	AEPI002763	N
AFAF016384	Anopheles farauti	AFAF016384	N
AFUN005064	Anopheles funestus	AFUN005064	N
AMAM014509	Anopheles maculatus	AMAM014509	N
Hsal_01159--NP_001035356.1_APIME	Harpegnathos saltator	Hsal_01159--NP_001035356.1_APIME	N
AMEM001056	Anopheles merus	AMEM001056	N
AMIN003105	Anopheles minimus	AMIN003105	N
AQUA008618	Anopheles quadriannulatus	AQUA008618	N
LLOJ000809	Lutzomyia longipalpis	LLOJ000809	N
MDOA002234	Musca domestica	MDOA002234	N
PPAI010690	Phlebotomus papatasi	PPAI010690	N
CpipJ_CPIJ003271	Culex pipiens	CpipJ_CPIJ003271	N
Cflo_02156--NP_001035356.1_APIME	Camponotus floridanus	Cflo_02156--NP_001035356.1_APIME	N
TC005476	Tribolium castaneum	TC005476	N
SINV21863	Solenopsis invicta	SINV21863	N
NV15003	Nasonia vitripennis	NV15003	N
KGM_00053	Danaus plexippus	KGM_00053	N
HMEL012334	Heliconius melpomene	HMEL012334	N
GB48273	Apis mellifera	GB48273	N
GE16700	Drosophila yakuba	FBgn0234197	N
GI16494	Drosophila mojavensis	FBgn0139242	N
CPIJ003271	Culex quinquefasciatus	CPIJ003271	N
BGIBMGA009909	Bombyx mori	BGIBMGA009909	N
AGAP002163	Anopheles gambiae	AGAP002163	N
ADAC009993	Anopheles darlingi	ADAC009993	N
ACEP24929	Atta cephalotes	ACEP24929	N

Carubv10001399m.g (Capsella rubella) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

431 Related TFs

Carubv10001399m.g **(Capsella rubella)
Myb/SANT**