Carubv10006734m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10006734m.g T286264_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.884 0.978
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.884 0.978
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006734m Myb 222 268
Carubv10006734m Myb 274 319

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ADNP Tursiops truncatus ENSTTRG00000009011 N
ADNP Ochotona princeps ENSOPRG00000002985 N
ENSPANG00000021104 Papio anubis ENSPANG00000021104 N
ADNP Procavia capensis ENSPCAG00000006836 N
ENSPPYG00000011130 Pongo abelii ENSPPYG00000011130 N
ENSPSIG00000015209 Pelodiscus sinensis ENSPSIG00000015209 N
ADNP Pan troglodytes ENSPTRG00000013623 N
ADNP Pteropus vampyrus ENSPVAG00000016481 N
Adnp Rattus norvegicus ENSRNOG00000010975 N
ADNP Sorex araneus ENSSARG00000008308 N
ENSSHAG00000018763 Sarcophilus harrisii ENSSHAG00000018763 N
ADNP Sus scrofa ENSSSCG00000007473 N
ENSSTOG00000023722 Ictidomys tridecemlineatus ENSSTOG00000023722 N
ADNP Tupaia belangeri ENSTBEG00000002890 N
ADNP Taeniopygia guttata ENSTGUG00000008662 N
ENSTSYG00000012059 Tarsius syrichta ENSTSYG00000012059 N
ADNP Otolemur garnettii ENSOGAG00000005381 N
ADNP Vicugna pacos ENSVPAG00000004917 N
Aan_R015824 Calypte anna Aan_R015824 N
Afo_R003260 Aptenodytes forsteri Afo_R003260 N
Alligator_sinensis_CCG001710.1 Alligator sinensis Alligator_sinensis_CCG001710.1 N
Brh_R005456 Buceros rhinoceros Brh_R005456 N
Cmyd_10017455 Chelonia mydas Cmyd_10017455 N
ENSBTAP00000000445-D1 Bos grunniens ENSBTAP00000000445-D1 N
ENSP00000360662 Macaca fascicularis ENSP00000360662 N
Gfo_R009593 Geospiza fortis Gfo_R009593 N
Myotis_brandtii_ADNP_10026361 Myotis brandtii Myotis_brandtii_ADNP_10026361 N
Ogr08135 Ophisaurus gracilis Ogr08135 N
Pvit_03339 Pogona vitticeps Pvit_03339 N
Tal_R004420 Tyto alba Tal_R004420 N
adnp Xenopus tropicalis XB-GENE-852807 N
ADNP Gallus gallus ENSGALG00000007989 N
ENSAPLG00000007870 Anas platyrhynchos ENSAPLG00000007870 N
ADNP Bos taurus ENSBTAG00000000340 N
ADNP Canis familiaris ENSCAFG00000011576 N
ADNP Choloepus hoffmanni ENSCHOG00000011573 N
ADNP Callithrix jacchus ENSCJAG00000000563 N
ADNP Cavia porcellus ENSCPOG00000001591 N
ENSCSAG00000015205 Chlorocebus sabaeus ENSCSAG00000015205 N
adnpb Danio rerio ENSDARG00000074293 N
ENSDNOG00000001749 Dasypus novemcinctus ENSDNOG00000001749 N
ADNP Equus caballus ENSECAG00000009307 N
ADNP Erinaceus europaeus ENSEEUG00000007786 N
ADNP Echinops telfairi ENSETEG00000011996 N
ENSFALG00000013032 Ficedula albicollis ENSFALG00000013032 N
ADNP Felis catus ENSFCAG00000025702 N
ADNP Homo sapiens ENSG00000101126 N
ENSAMEG00000013360 Ailuropoda melanoleuca ENSAMEG00000013360 N
ADNP Gorilla gorilla ENSGGOG00000003120 N
ENSLACG00000009474 Latimeria chalumnae ENSLACG00000009474 N
ADNP Loxodonta africana ENSLAFG00000004139 N
ENSMEUG00000007857 Macropus eugenii ENSMEUG00000007857 N
ADNP Meleagris gallopavo ENSMGAG00000009385 N
ENSMICG00000015956 Microcebus murinus ENSMICG00000015956 N
ADNP Myotis lucifugus ENSMLUG00000000002 N
ADNP Monodelphis domestica ENSMODG00000016350 N
ENSMPUG00000017548 Mustela putorius furo ENSMPUG00000017548 N
Adnp Mus musculus ENSMUSG00000051149 N
ENSNLEG00000006995 Nomascus leucogenys ENSNLEG00000006995 N
ADNP Ornithorhynchus anatinus ENSOANG00000008675 N
ENSOARG00000013868 Ovis aries ENSOARG00000013868 N
ADNP Oryctolagus cuniculus ENSOCUG00000014704 N