Carubv10016934m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10016934m.g T286360_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.849 0.979
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.849 0.979
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.841 0.957
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.841 0.936
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.823 0.915
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10016934m Myb 473 523

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU06907 Neurospora crassa NCU06907 D 0.000
MBR_02972 Metarhizium brunneum MBR_02972 I 0.000
MAPG_04524 Magnaporthe poae MAPG_04524 I 0.000
MGU_00040 Metarhizium guizhouense MGU_00040 I 0.000
MYCTH_2308260 Myceliophthora thermophila MYCTH_2308260 I 0.000
NechaG38204 Fusarium solani NechaG38204 I 0.000
NEUTE1DRAFT_130988 Neurospora tetrasperma NEUTE1DRAFT_130988 I 0.000
OCS_03275 Ophiocordyceps sinensis OCS_03275 I 0.000
PFICI_12570 Pestalotiopsis fici PFICI_12570 I 0.000
S40285_02311 Stachybotrys chlorohalonata S40285_02311 I 0.000
S40288_02152 Stachybotrys chartarum S40288_02152 I 0.000
SAPIO_CDS4389 Scedosporium apiospermum SAPIO_CDS4389 I 0.000
SMAC_05878 Sordaria macrospora SMAC_05878 I 0.000
SPBR_02307 Sporothrix brasiliensis SPBR_02307 I 0.000
THITE_2117700 Thielavia terrestris THITE_2117700 I 0.000
TRIATDRAFT_150201 Trichoderma atroviride TRIATDRAFT_150201 I 0.000
TRIREDRAFT_121584 Trichoderma reesei TRIREDRAFT_121584 I 0.000
TRIVIDRAFT_82456 Trichoderma virens TRIVIDRAFT_82456 I 0.000
UCREL1_8337 Eutypa lata UCREL1_8337 I 0.000
UCRPA7_7147 Togninia minima UCRPA7_7147 I 0.000
UV8b_4535 Ustilaginoidea virens UV8b_4535 I 0.000
VDAG_04003 Verticillium dahliae VDAG_04003 I 0.000
VDBG_03095 Verticillium alfalfae VDBG_03095 I 0.000
VHEMI07645 Torrubiella hemipterigena VHEMI07645 I 0.000
X797_001037 Metarhizium robertsii X797_001037 I 0.000
e_gw1.3.1240.1 Nectria haematococca e_gw1.3.1240.1 I 0.000
estExt_fgenesh2_pg.C_80281 Neurospora discreta estExt_fgenesh2_pg.C_80281 I 0.000
FFUJ_13548 Fusarium fujikuroi FFUJ_13548 I 0.000
AOL_s00083g463 Arthrobotrys oligospora AOL_s00083g463 I 0.000
BBA_01304 Beauveria bassiana BBA_01304 I 0.000
CCM_01294 Cordyceps militaris CCM_01294 I 0.000
CFIO01_07503 Colletotrichum fioriniae CFIO01_07503 I 0.000
CGGC5_13371 Colletotrichum gloeosporioides CGGC5_13371 I 0.000
CH063_01293 Colletotrichum higginsianum CH063_01293 I 0.000
CMQ_5441 Grosmannia clavigera CMQ_5441 I 0.000
Cob_06009 Colletotrichum orbiculare Cob_06009 I 0.000
CPUR_04347 Claviceps purpurea CPUR_04347 I 0.000
CSUB01_04252 Colletotrichum sublineola CSUB01_04252 I 0.000
CTHT_0018750 Chaetomium thermophilum CTHT_0018750 I 0.000
F503_03781 Ophiostoma piceae uamh F503_03781 I 0.000
VDBG_03095 Verticillium albo atrum VDBG_03095 I 0.000
FGRRES_06311 Fusarium graminearum FGRRES_06311 I 0.000
FOXG_08063 Fusarium oxysporum FOXG_08063 I 0.000
FPSE_01182 Fusarium pseudograminearum FPSE_01182 I 0.000
FVEG_04985 Fusarium verticillioides FVEG_04985 I 0.000
GGTG_05592 Gaeumannomyces graminis GGTG_05592 I 0.000
GLRG_01973 Colletotrichum graminicola GLRG_01973 I 0.000
H072_10673 Dactylellina haptotyla H072_10673 I 0.000
HMPREF1624_02827 Sporothrix schenckii HMPREF1624_02827 I 0.000
MAC_04654 Metarhizium acridum MAC_04654 I 0.000
MAJ_07370 Metarhizium majus MAJ_07370 I 0.000
MAM_00034 Metarhizium album MAM_00034 I 0.000
MANI_117684 Metarhizium anisopliae MANI_117684 I 0.000