Carubv10017875m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10017875m.g T286372_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.909 0.989
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.662 0.688
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.662 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017875m Myb 8 55
Carubv10017875m Myb 61 106

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

306 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSACAG00000001033 Anolis carolinensis ENSACAG00000001033 I
tbx20 Danio rerio ENSDARG00000005150 I
SMRZ_0000901601 Schistosoma margrebowiei SMRZ_0000901601 I
SCUD_0001668701 Schistosoma curassoni SCUD_0001668701 I
ENSTGUG00000007802 Taeniopygia guttata ENSTGUG00000007802 I
NEMVEDRAFT_v1g88753 Nematostella vectensis NEMVEDRAFT_v1g88753 I
Brh_R013163 Buceros rhinoceros Brh_R013163 I
nOo.2.0.1.g12774 Onchocerca ochengi nOo.2.0.1.g12774 N
DILT_0001799701 Diphyllobothrium latum DILT_0001799701 N
EEL_0001013401 Elaeophora elaphi EEL_0001013401 N
EVEC_0000447801 Enterobius vermicularis EVEC_0000447801 N
nDi.2.2.2.g08784 Dirofilaria immitis nDi.2.2.2.g08784 N
nLs.2.1.2.g03986 Litomosoides sigmodontis nLs.2.1.2.g03986 N
nOo.2.0.1.g07550 Onchocerca ochengi nOo.2.0.1.g07550 N
Minc16694 Meloidogyne incognita Minc16694 N
SROB_0001443501 Schistosoma rodhaini SROB_0001443501 N
TCLT_0000604201 Thelazia callipaeda TCLT_0000604201 N
TCNE_0000641501 Toxocara canis TCNE_0000641501 N
BTMF_0001772901 Brugia timori BTMF_0001772901 N
augustus_masked-nMf.1.1.scaf40912-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf40912-processed-gene-0.0 N
WUBG_11141 Wuchereria bancrofti WUBG_11141 N
Tal_R008745 Tyto alba Tal_R008745 N
Hsal_09270--XP_394607.3_APIME Harpegnathos saltator Hsal_09270--XP_394607.3_APIME N
LOAG_18576 Loa loa LOAG_18576 N
ENSTGUG00000013956 Taeniopygia guttata ENSTGUG00000013956 N
ENSOARG00000011096 Ovis aries ENSOARG00000011096 N
ENSDNOG00000008614 Dasypus novemcinctus ENSDNOG00000008614 N
CJA31660 Caenorhabditis japonica CJA31660 N
ACEP16058 Atta cephalotes ACEP16058 N
ACEP16054 Atta cephalotes ACEP16054 N