gene19228-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene19228-v1.0-hybrid T287341_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.875 0.957
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.867 0.935
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.867 0.935
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.867 0.935
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.867 0.935
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.867 0.935
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.865 0.935
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.865 0.935
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.865 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.852 0.891
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.837 0.935
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.837 0.935
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.837 0.935
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.704 0.674
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.704 0.674
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.704 0.674
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.672 0.674
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna19228.1-v1.0-hybrid Myb 70 115

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

306 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA03G0301600 Oryza glaberrima ORGLA03G0301600 N
chr4.CM0100.130.nc Lotus japonicus chr4.CM0100.130.nc N
PK04189.1 Cannabis sativa PK04189.1 N
Pavir.J00664 Panicum virgatum Pavir.J00664 N
Pavir.Ia00665 Panicum virgatum Pavir.Ia00665 N
gene27406-v1.0-hybrid Fragaria vesca gene27406-v1.0-hybrid N
evm.TU.supercontig_20.16 Carica papaya evm.TU.supercontig_20.16 N
Pm022161 Prunus mume Pm022161 N
Ca_05292 Cicer arietinum Ca_05292 N
Si036747m.g Setaria italica Si036747m.g N
Sb01g008950 Sorghum bicolor Sb01g008950 N
PRUPE_ppa023830mg Prunus persica PRUPE_ppa023830mg N
GATA19 Oryza sativa OS03G0734900 N
ORUFI03G34610 Oryza rufipogon ORUFI03G34610 N
GATA19 Oryza indica BGIOSGA009856 N
OPUNC03G30420 Oryza punctata OPUNC03G30420 N
ONIVA03G34920 Oryza nivara ONIVA03G34920 N
OMERI03G29830 Oryza meridionalis OMERI03G29830 N
OLONG_026796 Oryza longistaminata OLONG_026796 N
OGLUM03G32890 Oryza glumaepatula OGLUM03G32890 N
OBART03G33220 Oryza barthii OBART03G33220 N
OB03G40300 Oryza brachyantha OB03G40300 N
GSMUA_Achr7G01650_001 Musa acuminata GSMUA_Achr7G01650_001 N
GRMZM2G065896 Zea mays GRMZM2G065896 N
GLYMA08G07170 Glycine max GLYMA08G07170 N
GLYMA07G30140 Glycine max GLYMA07G30140 N
BRADI1G09550 Brachypodium distachyon BRADI1G09550 N