CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.Hb00732 *(Panicum virgatum)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Pavir.Hb00732	T289240_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB60 M07001_2.00	Arabidopsis thaliana	HNNHYYCAACYACYWHHNN	NNDDWRGTRGTTGRRDNND	Dap-seq OMalley et al.(2016) MYB60_col	0.820	0.935
ATY13 M07035_2.00	Arabidopsis thaliana	HAMCHMCCAMCHAHH	DDTDGKTGGKDGKTD	Dap-seq OMalley et al.(2016) ATY13_col_a	0.817	0.914
ATY13 M07036_2.00	Arabidopsis thaliana	HAMCHHCCAACHAHH	DDTDGTTGGDDGKTD	Dap-seq OMalley et al.(2016) ATY13_colamp_a	0.817	0.914
MYB30 M07089_2.00	Arabidopsis thaliana	NHHHCAACYACYWHH	DDWRGTRGTTGDDDN	Dap-seq OMalley et al.(2016) MYB30_col_a	0.784	0.882
MYB30 M07090_2.00	Arabidopsis thaliana	HHHYYHCCAACYAMY	RKTRGTTGGDRRDDD	Dap-seq OMalley et al.(2016) MYB30_colamp_a	0.784	0.882
MYB94 M02298_2.00	Arabidopsis thaliana	DACCGGTH	DACCGGTH	PBM Weirauch et al.(2014) pTH7085	0.769	0.882
MYB94 M07094_2.00	Arabidopsis thaliana	HHNYHYCAACYACYWHHNN	NNDDWRGTRGTTGRDRNDD	Dap-seq OMalley et al.(2016) MYB94_col_b	0.769	0.882
MYB96 M07153_2.00	Arabidopsis thaliana	HHHHHYHHCCAACYAHYWNHN	NDNWRDTRGTTGGDDRDDDDD	Dap-seq OMalley et al.(2016) MYB96_colamp_a	0.769	0.882
MYB96 M07154_2.00	Arabidopsis thaliana	YAMCHNCCAMCHAHHHHH	DDDDDTDGKTGGNDGKTR	Dap-seq OMalley et al.(2016) MYB96_col_b	0.769	0.882
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Hb00732.1.p	Myb	15	62	KGPWTPEEDIVLVSYIQQHGPGNWRSVPENTGLMRCSKSCRLRWTNYL
Pavir.Hb00732.1.p	Myb	68	113	RGNFTPHEEGIIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHL
Pavir.Hb00732.2.p	Myb	15	62	KGPWTPEEDIVLVSYIQQHGPGNWRSVPENTGLMRCSKSCRLRWTNYL
Pavir.Hb00732.2.p	Myb	68	113	RGNFTPHEEGIIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHL

Links
Other Myb/SANT family TFs
Other *Panicum virgatum* TFs

310 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
MGU_04530	Metarhizium guizhouense	MGU_04530	N	0.000
PCH_Pc20g11950	Penicillium rubens	PCH_Pc20g11950	N	0.000
TRIREDRAFT_62484	Trichoderma reesei	TRIREDRAFT_62484	N	0.000
UV8b_535	Ustilaginoidea virens	UV8b_535	N	0.000
AB08087.1	Alternaria brassicicola	AB08087.1	N	0.000
Pc20g11950	Penicillium chrysogenum	Pc20g11950	N	0.000