Pavir.J07446 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J07446 T289341_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.760 0.897
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.760 0.897
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.698 0.851
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J07446.1.p Myb 40 87
Pavir.J07446.1.p Myb 93 132

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

277 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ECPE_0000151501 Echinostoma caproni ECPE_0000151501 N