CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.J10894 *(Panicum virgatum)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Pavir.J10894	T289361_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB60 M07001_2.00	Arabidopsis thaliana	HNNHYYCAACYACYWHHNN	NNDDWRGTRGTTGRRDNND	Dap-seq OMalley et al.(2016) MYB60_col	0.820	0.935
ATY13 M07035_2.00	Arabidopsis thaliana	HAMCHMCCAMCHAHH	DDTDGKTGGKDGKTD	Dap-seq OMalley et al.(2016) ATY13_col_a	0.817	0.914
ATY13 M07036_2.00	Arabidopsis thaliana	HAMCHHCCAACHAHH	DDTDGTTGGDDGKTD	Dap-seq OMalley et al.(2016) ATY13_colamp_a	0.817	0.914
MYB30 M07089_2.00	Arabidopsis thaliana	NHHHCAACYACYWHH	DDWRGTRGTTGDDDN	Dap-seq OMalley et al.(2016) MYB30_col_a	0.784	0.882
MYB30 M07090_2.00	Arabidopsis thaliana	HHHYYHCCAACYAMY	RKTRGTTGGDRRDDD	Dap-seq OMalley et al.(2016) MYB30_colamp_a	0.784	0.882
MYB94 M02298_2.00	Arabidopsis thaliana	DACCGGTH	DACCGGTH	PBM Weirauch et al.(2014) pTH7085	0.769	0.882
MYB94 M07094_2.00	Arabidopsis thaliana	HHNYHYCAACYACYWHHNN	NNDDWRGTRGTTGRDRNDD	Dap-seq OMalley et al.(2016) MYB94_col_b	0.769	0.882
MYB96 M07153_2.00	Arabidopsis thaliana	HHHHHYHHCCAACYAHYWNHN	NDNWRDTRGTTGGDDRDDDDD	Dap-seq OMalley et al.(2016) MYB96_colamp_a	0.769	0.882
MYB96 M07154_2.00	Arabidopsis thaliana	YAMCHNCCAMCHAHHHHH	DDDDDTDGKTGGNDGKTR	Dap-seq OMalley et al.(2016) MYB96_col_b	0.769	0.882
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.J10894.1.p	Myb	15	62	KGPWTPEEDIVLVSYIQQHGPGNWRSVPENTGLMRCSKSCRLRWTNYL
Pavir.J10894.1.p	Myb	68	113	RGNFTPHEEGIIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHL

Links
Other Myb/SANT family TFs
Other *Panicum virgatum* TFs

309 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA033046	Oryza indica	BGIOSGA033046	N	0.000
GRMZM2G001577	Zea mays	GRMZM2G001577	N	0.000
LPERR10G08420	Leersia perrieri	LPERR10G08420	N	0.000
OB10G18990	Oryza brachyantha	OB10G18990	N	0.000
OBART10G11680	Oryza barthii	OBART10G11680	N	0.000
OGLUM10G11420	Oryza glumaepatula	OGLUM10G11420	N	0.000
OLONG_009446	Oryza longistaminata	OLONG_009446	N	0.000
OMERI10G08650	Oryza meridionalis	OMERI10G08650	N	0.000
ONIVA10G10850	Oryza nivara	ONIVA10G10850	N	0.000
ORGLA10G0102900	Oryza glaberrima	ORGLA10G0102900	N	0.000
ORUFI10G12190	Oryza rufipogon	ORUFI10G12190	N	0.000