Pavir.J14051 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J14051 T289377_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.763 0.787
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.763 0.787
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.763 0.787
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.763 0.787
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.763 0.787
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J14051.1.p Myb 526 576

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

200 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CTRG_04281 Candida tropicalis CTRG_04281 I 0.000
fgeneshMC_pg.6_#_568 Mucor circinelloides fgeneshMC_pg.6_#_568 I 0.000
SPAPADRAFT_130700 Spathaspora passalidarum SPAPADRAFT_130700 I 0.000
HPODL_04325 Ogataea parapolymorpha HPODL_04325 I 0.000
GNLVRS01_PISO0B11001g Millerozyma farinosa GNLVRS01_PISO0B11001g I 0.000
GNLVRS01_PISO0A10934g Millerozyma farinosa GNLVRS01_PISO0A10934g I 0.000
CGGC5_3848 Colletotrichum gloeosporioides CGGC5_3848 I 0.000
CANTEDRAFT_114387 Candida tenuis CANTEDRAFT_114387 I 0.000
RO3G_05746 Rhizopus oryzae RO3G_05746 I 0.000
CaO19.6102 Candida albicans CaO19.6102 N 0.000
CD36_00090 Candida dubliniensis CD36_00090 N 0.000
CaO19.13521 Candida albicans CaO19.13521 N 0.000
CLUG_03450 Clavispora lusitaniae CLUG_03450 N 0.000
CLUG_03450 Candida lusitaniae CLUG_03450 N 0.000
DEHA2A13310g Debaryomyces hansenii DEHA2A13310g N 0.000
BN7_198 Wickerhamomyces ciferrii BN7_198 N 0.000
LELG_01449 Lodderomyces elongisporus LELG_01449 N 0.000
PGUG_01090 Meyerozyma guilliermondii PGUG_01090 N 0.000
PICST_68235 Scheffersomyces stipitis PICST_68235 N 0.000
PGUG_01090 Candida guilliermondii PGUG_01090 N 0.000
estExt_fgenesh1_pg.C_chr_7.10008 Pichia stipitis estExt_fgenesh1_pg.C_chr_7.10008 N 0.000
CPAG_01343 Candida parapsilosis CPAG_01343 N 0.000