Pavir.J38487 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J38487 T289479_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J38487.1.p Myb 284 334
Pavir.J38487.2.p Myb 192 242

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_14s0108g01580 Vitis vinifera VIT_14s0108g01580 N 0.674
Si035368m.g Setaria italica Si035368m.g N 0.665
Si038913m.g Setaria italica Si038913m.g N 0.909
Traes_1BS_2D464CB3E Triticum aestivum Traes_1BS_2D464CB3E N 0.748
Traes_5AS_C458D04EB Triticum aestivum Traes_5AS_C458D04EB N 0.748
Traes_5BS_199E47242 Triticum aestivum Traes_5BS_199E47242 N 0.727
Traes_5DS_ED5D9E7C8 Triticum aestivum Traes_5DS_ED5D9E7C8 N 0.758
Traes_6DL_95CDF7628 Triticum aestivum Traes_6DL_95CDF7628 N 0.748
TRIUR3_27708 Triticum urartu TRIUR3_27708 N 0.748
Sb01g043100 Sorghum bicolor Sb01g043100 N 0.849
cassava22481.valid.m1 Manihot esculenta cassava22481.valid.m1 N 0.672
Aquca_026_00151 Aquilegia coerulea Aquca_026_00151 N 0.675
Cagra.3501s0113 Capsella grandiflora Cagra.3501s0113 N 0.730
Pavir.Ia03027 Panicum virgatum Pavir.Ia03027 N 0.715
Pavir.Ia04672 Panicum virgatum Pavir.Ia04672 N 0.909
Pavir.Ib02072 Panicum virgatum Pavir.Ib02072 N 0.697
PK21343.1 Cannabis sativa PK21343.1 N 0.688
OBART03G22020 Oryza barthii OBART03G22020 N 0.676
BRADI4G40450 Brachypodium distachyon BRADI4G40450 N 0.864
F775_32528 Aegilops tauschii F775_32528 N 0.758
GRMZM2G100431 Zea mays GRMZM2G100431 N 0.888
GSMUA_Achr1G24520_001 Musa acuminata GSMUA_Achr1G24520_001 N 0.758
GSMUA_Achr6G23940_001 Musa acuminata GSMUA_Achr6G23940_001 N 0.692
GSMUA_Achr6G24610_001 Musa acuminata GSMUA_Achr6G24610_001 N 0.749
MLOC_21002 Hordeum vulgare MLOC_21002 N 0.749
OB03G31070 Oryza brachyantha OB03G31070 N 0.676
BGIOSGA012915 Oryza indica BGIOSGA012915 N 0.676
OGLUM03G22800 Oryza glumaepatula OGLUM03G22800 N 0.676
OLONG_010547 Oryza longistaminata OLONG_010547 N 0.676
OMERI03G19860 Oryza meridionalis OMERI03G19860 N 0.676
ONIVA03G23870 Oryza nivara ONIVA03G23870 N 0.676
OPUNC03G20760 Oryza punctata OPUNC03G20760 N 0.676
ORGLA03G0204400 Oryza glaberrima ORGLA03G0204400 N 0.676
ORUFI03G22740 Oryza rufipogon ORUFI03G22740 N 0.676
OS03G0425800 Oryza sativa OS03G0425800 N 0.676