CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10011650m.g
(
Eutrema salsugineum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Thhalv10011650m.g
T290017_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G49010
M01269_2.00
Arabidopsis thaliana
NNYWATCNN
NNGATWRNN
PBM
Lambert et al.(2019)
pTH11535
0.826
0.913
AT1G49010
M07022_2.00
Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN
Dap-seq
OMalley et al.(2016)
At1g49010_col_a
0.826
0.913
AT1G49010
M07023_2.00
Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW
Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a
0.826
0.913
PK19621.1
M01280_2.00
Cannabis sativa
NNTTATCYN
NRGATAANN
PBM
Lambert et al.(2019)
pTH10140
0.718
0.837
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10011650m
Myb
141
186
PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Eutrema salsugineum
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy