POPTR_0011s12400 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0011s12400 T295300_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC055
M00976_2.00 		Arabidopsis thaliana
RYACGKAAN
NTTMCGTRY		 PBM
Lindemose et al.(2014)
ANAC055 		0.927 0.886
NAC055
M00885_2.00 		Arabidopsis thaliana
TTACGTD
HACGTAA		 PBM
Franco-Zorrilla et al.(2014)
ANAC55 		0.927 0.886
NAC055
M07207_2.00 		Arabidopsis thaliana
DDNYNWNWNNNDYACGKMWYY
RRWKMCGTRHNNNWNWNRNHH		 Dap-seq
OMalley et al.(2016)
ANAC055_col 		0.927 0.886
NAC019
M00972_2.00 		Arabidopsis thaliana
NNYACGBMWN
NWKVCGTRNN		 PBM
Lindemose et al.(2014)
ANAC019 		0.902 0.868
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s12400.1 NAC/NAM 15 139

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK20225.1 Cannabis sativa PK20225.1 D
Solyc02g076920.2 Solanum lycopersicum Solyc02g076920.2 I
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I
TCM_029711 Theobroma cacao TCM_029711 I
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I
Cla019977 Citrullus lanatus Cla019977 I
29900.m001610 Ricinus communis 29900.m001610 I
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I
cassava32077.m1 Manihot esculenta cassava32077.m1 I
Cucsa.213230 Cucumis sativus Cucsa.213230 I
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I
Ciclev10016289m.g Citrus clementina Ciclev10016289m.g I
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I
Lus10001885.g Linum usitatissimum Lus10001885.g I
Lus10013917.g Linum usitatissimum Lus10013917.g I
MDP0000249969 Malus domestica MDP0000249969 I
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I
Pavir.Eb00095 Panicum virgatum Pavir.Eb00095 I
OB01G17480 Oryza brachyantha OB01G17480 I
BGIOSGA003013 Oryza indica BGIOSGA003013 I
GLYMA07G32690 Glycine max GLYMA07G32690 I
GRMZM2G016039 Zea mays GRMZM2G016039 I
GRMZM2G166642 Zea mays GRMZM2G166642 I
GSMUA_Achr7G10740_001 Musa acuminata GSMUA_Achr7G10740_001 I
LPERR01G07000 Leersia perrieri LPERR01G07000 I
MLOC_64390 Hordeum vulgare MLOC_64390 I
Si002517m.g Setaria italica Si002517m.g I
OGLUM01G08450 Oryza glumaepatula OGLUM01G08450 I
OMERI01G07330 Oryza meridionalis OMERI01G07330 I
Sb03g001730 Sorghum bicolor Sb03g001730 I
OMERI06G24090 Oryza meridionalis OMERI06G24090 I
ONIVA01G09540 Oryza nivara ONIVA01G09540 I
OPUNC01G07130 Oryza punctata OPUNC01G07130 I
OPUNC09G11520 Oryza punctata OPUNC09G11520 I
ORGLA01G0065100 Oryza glaberrima ORGLA01G0065100 I
PGSC0003DMG400010208 Solanum tuberosum PGSC0003DMG400010208 I
ORUFI01G08040 Oryza rufipogon ORUFI01G08040 I
GSMUA_Achr3G03510_001 Musa acuminata GSMUA_Achr3G03510_001 N
SapurV1A.0029s0640 Salix purpurea SapurV1A.0029s0640 N
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N
PRUPE_ppa021837mg Prunus persica PRUPE_ppa021837mg N
MDP0000256492 Malus domestica MDP0000256492 N
GSMUA_Achr10G14370_001 Musa acuminata GSMUA_Achr10G14370_001 N
GSMUA_Achr2G20040_001 Musa acuminata GSMUA_Achr2G20040_001 N
Aquca_045_00168 Aquilegia coerulea Aquca_045_00168 N
Eucgr.K01103 Eucalyptus grandis Eucgr.K01103 N
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N
mgf022146m Mimulus guttatus mgf022146m N